Transcriptional regulation and metabolism

M. P. Brynildsen, W. W. Wong, J. C. Liao

Research output: Contribution to journalArticle

5 Scopus citations

Abstract

Understanding organisms from a systems perspective is essential for predicting cellular behaviour as well as designing gene-metabolic circuits for novel functions. The structure, dynamics and interactions of cellular networks are all vital components of systems biology. To facilitate investigation of these aspects, we have developed an integrative technique called network component analysis, which utilizes mRNA expression and transcriptional network connectivity to determine network component dynamics, functions and interactions. This approach has been applied to elucidate transcription factor dynamics in Saccharomyces cerevisiae cell-cycle regulation, detect cross-talks in Escherichia coli two-component signalling pathways, and characterize E. coli carbon source transition. An ultimate test of system-wide understanding is the ability to design and construct novel gene-metabolic circuits. To this end, artificial feedback regulation, cell-cell communication and oscillatory circuits have been constructed, which demonstrate the design principles of gene-metabolic regulation in the cell.

Original languageEnglish (US)
Pages (from-to)1423-1426
Number of pages4
JournalBiochemical Society Transactions
Volume33
Issue number6
DOIs
StatePublished - Dec 1 2005
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Biochemistry

Keywords

  • Chromatin immunoprecipitation-DNA microarray (ChiP-chip)
  • Gene circuit
  • Metabolism
  • Network component analysis (NCA)
  • Transcription factor
  • Transcriptional regulation

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