STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method

Dent A. Earl; Bridgett Marie vonHoldt

doi:10.1007/s12686-011-9548-7

STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method

Dent A. Earl, Bridgett Marie vonHoldt

Research output: Contribution to journal › Article › peer-review

10079 Scopus citations

Abstract

We present STRUCTURE HARVESTER (available at http://taylor0.biology.ucla.edu/structureHarvester/), a web-based program for collating results generated by the program STRUCTURE. The program provides a fast way to assess and visualize likelihood values across multiple values of K and hundreds of iterations for easier detection of the number of genetic groups that best fit the data. In addition, STRUCTURE HARVESTER will reformat data for use in downstream programs, such as CLUMPP.

Original language	English (US)
Pages (from-to)	359-361
Number of pages	3
Journal	Conservation Genetics Resources
Volume	4
Issue number	2
DOIs	https://doi.org/10.1007/s12686-011-9548-7
State	Published - Jun 2012

All Science Journal Classification (ASJC) codes

Ecology, Evolution, Behavior and Systematics
Genetics

Keywords

Clustering
Evanno method
Population genetics
Population structure
Structure
Visualization

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10.1007/s12686-011-9548-7

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title = "STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method",

abstract = "We present STRUCTURE HARVESTER (available at http://taylor0.biology.ucla.edu/structureHarvester/), a web-based program for collating results generated by the program STRUCTURE. The program provides a fast way to assess and visualize likelihood values across multiple values of K and hundreds of iterations for easier detection of the number of genetic groups that best fit the data. In addition, STRUCTURE HARVESTER will reformat data for use in downstream programs, such as CLUMPP.",

keywords = "Clustering, Evanno method, Population genetics, Population structure, Structure, Visualization",

author = "Earl, {Dent A.} and vonHoldt, {Bridgett Marie}",

note = "Funding Information: Acknowledgments We thank J Goudet for improving our implementation of the Evanno method (personal communications). We thank C Taylor at University of California at Los Angeles for hosting the website. This work was supported by the National Cancer Institute grants 1U24CA143858-01 and 5R21CA135937.",

year = "2012",

month = jun,

doi = "10.1007/s12686-011-9548-7",

language = "English (US)",

volume = "4",

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journal = "Conservation Genetics Resources",

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N2 - We present STRUCTURE HARVESTER (available at http://taylor0.biology.ucla.edu/structureHarvester/), a web-based program for collating results generated by the program STRUCTURE. The program provides a fast way to assess and visualize likelihood values across multiple values of K and hundreds of iterations for easier detection of the number of genetic groups that best fit the data. In addition, STRUCTURE HARVESTER will reformat data for use in downstream programs, such as CLUMPP.

AB - We present STRUCTURE HARVESTER (available at http://taylor0.biology.ucla.edu/structureHarvester/), a web-based program for collating results generated by the program STRUCTURE. The program provides a fast way to assess and visualize likelihood values across multiple values of K and hundreds of iterations for easier detection of the number of genetic groups that best fit the data. In addition, STRUCTURE HARVESTER will reformat data for use in downstream programs, such as CLUMPP.

KW - Clustering

KW - Evanno method

KW - Population genetics

KW - Population structure

KW - Structure

KW - Visualization

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STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method

Abstract

All Science Journal Classification (ASJC) codes

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