Repertoire sequencing and the statistical ensemble approach to adaptive immunity

Curtis Gove Callan, Thierry Mora, Aleksandra M. Walczak

Research output: Contribution to journalReview article

6 Scopus citations

Abstract

The recent advent of high-throughput sequencing of immune receptors allows for the study of immune repertoires in unprecedented depth. This should eventually lead to a better understanding of basic immune function and the development of valuable new diagnostic tools. However, the interpretation of these new sequence data can be difficult because the relationship between receptor sequence and immune specificity is generally unknown. In particular, phenotypically similar repertoires will in general be completely different at the sequence level because of cross-reactivity. Here we argue that sequence repertoires need to be considered statistically to overcome this functional degeneracy. New tools are needed to extract the functionally relevant statistical features from sequence data, separating them from individual-specific, stochastic, and other non-reproducible effects.

Original languageEnglish (US)
Pages (from-to)44-47
Number of pages4
JournalCurrent Opinion in Systems Biology
Volume1
DOIs
StatePublished - Feb 2017

All Science Journal Classification (ASJC) codes

  • Modeling and Simulation
  • Biochemistry, Genetics and Molecular Biology(all)
  • Drug Discovery
  • Computer Science Applications
  • Applied Mathematics

Keywords

  • Immunology
  • Next generation sequencing
  • Statistical physics

Fingerprint Dive into the research topics of 'Repertoire sequencing and the statistical ensemble approach to adaptive immunity'. Together they form a unique fingerprint.

  • Cite this