Parameter identifiability and model selection for partial differential equation models of cell invasion

Yue Liu, Kevin Suh, Philip K. Maini, Daniel J. Cohen, Ruth E. Baker

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

When employing mechanistic models to study biological phenomena, practical parameter identifiability is important for making accurate predictions across wide ranges of unseen scenarios, as well as for understanding the underlying mechanisms. In this work, we use a profile-likelihood approach to investigate parameter identifiability for four extensions of the Fisher–Kolmogorov–Petrovsky–Piskunov (Fisher–KPP) model, given experimental data from a cell invasion assay. We show that more complicated models tend to be less identifiable, with parameter estimates being more sensitive to subtle differences in experimental procedures, and that they require more data to be practically identifiable. As a result, we suggest that parameter identifiability should be considered alongside goodness-of-fit and model complexity as criteria for model selection.

Original languageEnglish (US)
Article number20230607
JournalJournal of the Royal Society Interface
Volume21
Issue number212
DOIs
StatePublished - Mar 6 2024

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Biophysics
  • Bioengineering
  • Biomaterials
  • Biochemistry
  • Biomedical Engineering

Keywords

  • cell invasion
  • model selection
  • parameter identifiability
  • profile likelihood
  • reaction–diffusion

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