Abstract
The exploration of epidemic dynamics on dynamically evolving (“adaptive”) networks poses nontrivial challenges to the modeler, such as the determination of a small number of informative statistics of the detailed network state (that is, a few “good observables”) that usefully summarize the overall (macroscopic, systems-level) behavior. Obtaining reduced, small size accurate models in terms of these few statistical observables – that is, trying to coarse-grain the full network epidemic model to a small but useful macroscopic one – is even more daunting. Here we describe a data-based approach to solving the first challenge: the detection of a few informative collective observables of the detailed epidemic dynamics. This is accomplished through Diffusion Maps (DMAPS), a recently developed data-mining technique. We illustrate the approach through simulations of a simple mathematical model of epidemics on a network: a model known to exhibit complex temporal dynamics. We discuss potential extensions of the approach, as well as possible shortcomings.
Original language | English (US) |
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Pages (from-to) | 153-162 |
Number of pages | 10 |
Journal | Virulence |
Volume | 7 |
Issue number | 2 |
DOIs | |
State | Published - Feb 17 2016 |
All Science Journal Classification (ASJC) codes
- Microbiology (medical)
- Infectious Diseases
- Parasitology
- Microbiology
- Immunology
Keywords
- SIS
- adaptive networks
- data mining
- diffusion maps
- epidemics
- equation-free