Abstract
We consider the problem of learning a matching (i.e., a graph in which all vertices have degree 0 or 1) in a model where the only allowed operation is to query whether a set of vertices induces an edge. This is motivated by a problem that arises in molecular biology. In the deterministic nonadaptive setting, we prove a (1/2 + o(1))( n 2) upper bound and a nearly matching 0.32 ( n 2) lower bound for the minimum possible number of queries. In contrast, if we allow randomness, then we obtain (by a randomized, nonadaptive algorithm) a much lower O(n log n) upper bound, which is best possible (even for randomized fully adaptive algorithms).
Original language | English (US) |
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Pages (from-to) | 487-501 |
Number of pages | 15 |
Journal | SIAM Journal on Computing |
Volume | 33 |
Issue number | 2 |
DOIs | |
State | Published - Jan 2004 |
Externally published | Yes |
All Science Journal Classification (ASJC) codes
- General Computer Science
- General Mathematics
Keywords
- Combinatorial search problems
- Finite protective planes
- Genome sequencing
- Matchings in graphs