TY - JOUR
T1 - Impaired cell fate through gain-of-function mutations in a chromatin reader
AU - Wan, Liling
AU - Chong, Shasha
AU - Xuan, Fan
AU - Liang, Angela
AU - Cui, Xiaodong
AU - Gates, Leah
AU - Carroll, Thomas S.
AU - Li, Yuanyuan
AU - Feng, Lijuan
AU - Chen, Guochao
AU - Wang, Shu Ping
AU - Ortiz, Michael V.
AU - Daley, Sara K.
AU - Wang, Xiaolu
AU - Xuan, Hongwen
AU - Kentsis, Alex
AU - Muir, Tom W.
AU - Roeder, Robert G.
AU - Li, Haitao
AU - Li, Wei
AU - Tjian, Robert
AU - Wen, Hong
AU - Allis, C. David
N1 - Funding Information:
Acknowledgements We thank R. Nishinakamura, A. Taguchi and Z. Li for providing reagents and discussions related to kidney differentiation assays; M. Leboeuf for technical assistance; A. Soshnev for help with figure preparation; and members of the Allis and Wen laboratories for scientific input throughout the study. We thank the Rockefeller University Genomic Resource Center, the Bio-Imaging Resource Center, the Flow Cytometry Resource Center and the MD Anderson Science Park Next-Generation Sequencing Facility (Cancer Prevention and Research Institute of Texas (CPRIT), grant RP120348). The research was supported by funds from the National Cancer Institute (grant 5R01CA204639-03), the Leukaemia and Lymphoma Society (LLS-SCOR 7006-13), and the Rockefeller University and St Jude Children’s Research Hospital Collaborative on Chromatin Regulation in Pediatric Cancer (to C.D.A.); from CPRIT (grant RP160237) and the Van Andel Institute (to H.W.); and from the National Institutes of Health (NIH grants R01HG007538, R01CA193466 and R01CA228140, to W.L.). L.W. is supported by the Jane Coffin Childs Memorial Fund and an NIH Pathway to Independence Award (1K99CA226399-01). M.V.O. is supported by a K12 Award from the National Cancer Institute (K12CA184746).
Publisher Copyright:
© 2019, The Author(s), under exclusive licence to Springer Nature Limited.
PY - 2020/1/2
Y1 - 2020/1/2
N2 - Modifications of histone proteins have essential roles in normal development and human disease. Recognition of modified histones by ‘reader’ proteins is a key mechanism that mediates the function of histone modifications, but how the dysregulation of these readers might contribute to disease remains poorly understood. We previously identified the ENL protein as a reader of histone acetylation via its YEATS domain, linking it to the expression of cancer-driving genes in acute leukaemia1. Recurrent hotspot mutations have been found in the ENL YEATS domain in Wilms tumour2,3, the most common type of paediatric kidney cancer. Here we show, using human and mouse cells, that these mutations impair cell-fate regulation by conferring gain-of-function in chromatin recruitment and transcriptional control. ENL mutants induce gene-expression changes that favour a premalignant cell fate, and, in an assay for nephrogenesis using murine cells, result in undifferentiated structures resembling those observed in human Wilms tumour. Mechanistically, although bound to largely similar genomic loci as the wild-type protein, ENL mutants exhibit increased occupancy at a subset of targets, leading to a marked increase in the recruitment and activity of transcription elongation machinery that enforces active transcription from target loci. Furthermore, ectopically expressed ENL mutants exhibit greater self-association and form discrete and dynamic nuclear puncta that are characteristic of biomolecular hubs consisting of local high concentrations of regulatory factors. Such mutation-driven ENL self-association is functionally linked to enhanced chromatin occupancy and gene activation. Collectively, our findings show that hotspot mutations in a chromatin-reader domain drive self-reinforced recruitment, derailing normal cell-fate control during development and leading to an oncogenic outcome.
AB - Modifications of histone proteins have essential roles in normal development and human disease. Recognition of modified histones by ‘reader’ proteins is a key mechanism that mediates the function of histone modifications, but how the dysregulation of these readers might contribute to disease remains poorly understood. We previously identified the ENL protein as a reader of histone acetylation via its YEATS domain, linking it to the expression of cancer-driving genes in acute leukaemia1. Recurrent hotspot mutations have been found in the ENL YEATS domain in Wilms tumour2,3, the most common type of paediatric kidney cancer. Here we show, using human and mouse cells, that these mutations impair cell-fate regulation by conferring gain-of-function in chromatin recruitment and transcriptional control. ENL mutants induce gene-expression changes that favour a premalignant cell fate, and, in an assay for nephrogenesis using murine cells, result in undifferentiated structures resembling those observed in human Wilms tumour. Mechanistically, although bound to largely similar genomic loci as the wild-type protein, ENL mutants exhibit increased occupancy at a subset of targets, leading to a marked increase in the recruitment and activity of transcription elongation machinery that enforces active transcription from target loci. Furthermore, ectopically expressed ENL mutants exhibit greater self-association and form discrete and dynamic nuclear puncta that are characteristic of biomolecular hubs consisting of local high concentrations of regulatory factors. Such mutation-driven ENL self-association is functionally linked to enhanced chromatin occupancy and gene activation. Collectively, our findings show that hotspot mutations in a chromatin-reader domain drive self-reinforced recruitment, derailing normal cell-fate control during development and leading to an oncogenic outcome.
UR - http://www.scopus.com/inward/record.url?scp=85076889377&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85076889377&partnerID=8YFLogxK
U2 - 10.1038/s41586-019-1842-7
DO - 10.1038/s41586-019-1842-7
M3 - Article
C2 - 31853060
AN - SCOPUS:85076889377
SN - 0028-0836
VL - 577
SP - 121
EP - 126
JO - Nature
JF - Nature
IS - 7788
ER -