IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment

  • Christopher J. Nirschl
  • , Mayte Suárez-Fariñas
  • , Benjamin Izar
  • , Sanjay Prakadan
  • , Ruth Dannenfelser
  • , Itay Tirosh
  • , Yong Liu
  • , Qian Zhu
  • , K. Sanjana P. Devi
  • , Shaina L. Carroll
  • , David Chau
  • , Melika Rezaee
  • , Tae Gyun Kim
  • , Ruiqi Huang
  • , Judilyn Fuentes-Duculan
  • , George X. Song-Zhao
  • , Nicholas Gulati
  • , Michelle A. Lowes
  • , Sandra L. King
  • , Francisco J. Quintana
  • Young suk Lee, James G. Krueger, Kavita Y. Sarin, Charles H. Yoon, Levi Garraway, Aviv Regev, Alex K. Shalek, Olga G. Troyanskaya, Niroshana Anandasabapathy

Research output: Contribution to journalArticlepeer-review

Abstract

Homeostatic programs balance immune protection and self-tolerance. Such mechanisms likely impact autoimmunity and tumor formation, respectively. How homeostasis is maintained and impacts tumor surveillance is unknown. Here, we find that different immune mononuclear phagocytes share a conserved steady-state program during differentiation and entry into healthy tissue. IFNγ is necessary and sufficient to induce this program, revealing a key instructive role. Remarkably, homeostatic and IFNγ-dependent programs enrich across primary human tumors, including melanoma, and stratify survival. Single-cell RNA sequencing (RNA-seq) reveals enrichment of homeostatic modules in monocytes and DCs from human metastatic melanoma. Suppressor-of-cytokine-2 (SOCS2) protein, a conserved program transcript, is expressed by mononuclear phagocytes infiltrating primary melanoma and is induced by IFNγ. SOCS2 limits adaptive anti-tumoral immunity and DC-based priming of T cells in vivo, indicating a critical regulatory role. These findings link immune homeostasis to key determinants of anti-tumoral immunity and escape, revealing co-opting of tissue-specific immune development in the tumor microenvironment.

Original languageEnglish (US)
Pages (from-to)127-141.e15
JournalCell
Volume170
Issue number1
DOIs
StatePublished - Jun 29 2017

All Science Journal Classification (ASJC) codes

  • General Biochemistry, Genetics and Molecular Biology

Keywords

  • IFNγ
  • dendritic cells
  • differentiation
  • homeostasis
  • immunotherapy
  • melanoma
  • suppressor-of-cytokine-signaling 2 (SOCS2)
  • tissue mononuclear phagocytes
  • tolerance
  • tumor microenvironment

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