Comparison of sampling techniques for bayesian parameter estimation

Rupert Allison, Joanna Dunkley

Research output: Contribution to journalArticle

25 Scopus citations

Abstract

The posterior probability distribution for a set of model parameters encodes all that the data have to tell us in the context of a given model; it is the fundamental quantity for Bayesian parameter estimation. In order to infer the posterior probability distribution we have to decide how to explore parameter space. Here we compare three prescriptions for how parameter space is navigated, discussing their relativemerits.We consider Metropolis-Hasting sampling, nested sampling and affine-invariant ensembleMarkov chainMonte Carlo (MCMC) sampling. We focus on their performance on toy-model Gaussian likelihoods and on a real-world cosmological data set.We outline the sampling algorithms themselves and elaborate on performance diagnostics such as convergence time, scope for parallelization, dimensional scaling, requisite tunings and suitability for non-Gaussian distributions. We find that nested sampling delivers high-fidelity estimates for posterior statistics at low computational cost, and should be adopted in favour of Metropolis-Hastings in many cases. Affine-invariant MCMC is competitive when computing clusters can be utilized for massive parallelization. Affine-invariant MCMC and existing extensions to nested sampling naturally probe multimodal and curving distributions.

Original languageEnglish (US)
Pages (from-to)3918-3928
Number of pages11
JournalMonthly Notices of the Royal Astronomical Society
Volume437
Issue number4
DOIs
StatePublished - Feb 1 2014
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Astronomy and Astrophysics
  • Space and Planetary Science

Keywords

  • Methods
  • Statistical-cosmological parameters

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