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Sneha Dilip Kumar Goenka

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20192024

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  • 2 Conference contribution
  • 2 Article
  • 2 Letter

  • Local read haplotagging enables accurate long-read small variant calling

    Kolesnikov, A., Cook, D., Nattestad, M., Brambrink, L., McNulty, B., Gorzynski, J., Goenka, S., Ashley, E. A., Jain, M., Miga, K. H., Paten, B., Chang, P. C., Carroll, A. & Shafin, K., Dec 2024, In: Nature communications. 15, 1, 5907.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1 Scopus citations

  • Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

    Goenka, S. D., Gorzynski, J. E., Shafin, K., Fisk, D. G., Pesout, T., Jensen, T. D., Monlong, J., Chang, P. C., Baid, G., Bernstein, J. A., Christle, J. W., Dalton, K. P., Garalde, D. R., Grove, M. E., Guillory, J., Kolesnikov, A., Nattestad, M., Ruzhnikov, M. R. Z., Samadi, M. & Sethia, A. & 9 others, Spiteri, E., Wright, C. J., Xiong, K., Zhu, T., Jain, M., Sedlazeck, F. J., Carroll, A., Paten, B. & Ashley, E. A., Jul 2022, In: Nature biotechnology. 40, 7, p. 1035-1041 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    59 Scopus citations

  • Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting

    Gorzynski, J. E., Goenka, S. D., Shafin, K., Jensen, T. D., Fisk, D. G., Grove, M. E., Spiteri, E., Pesout, T., Monlong, J., Baid, G., Bernstein, J. A., Ceresnak, S., Chang, P. C., Christle, J. W., Chubb, H., Dalton, K. P., Dunn, K., Garalde, D. R., Guillory, J. & Knowles, J. W. & 17 others, Kolesnikov, A., Ma, M., Moscarello, T., Nattestad, M., Perez, M., Ruzhnikov, M. R. Z., Samadi, M., Setia, A., Wright, C., Wusthoff, C. J., Xiong, K., Zhu, T., Jain, M., Sedlazeck, F. J., Carroll, A., Paten, B. & Ashley, E. A., Feb 17 2022, In: New England Journal of Medicine. 386, 7, p. 700-702 3 p.

    Research output: Contribution to journal › Letter › peer-review

    Open Access
    124 Scopus citations

  • Ultra-Rapid Nanopore Whole Genome Genetic Diagnosis of Dilated Cardiomyopathy in an Adolescent With Cardiogenic Shock

    Gorzynski, J. E., Goenka, S. D., Shafin, K., Jensen, T. D., Fisk, D. G., Grove, M. E., Spiteri, E., Pesout, T., Monlong, J., Bernstein, J. A., Ceresnak, S., Chang, P. C., Christle, J. W., Chubb, H., Dunn, K., Garalde, D. R., Guillory, J., Ruzhnikov, M. R. Z., Wright, C. & Wusthoff, C. J. & 8 others, Xiong, K., Hollander, S. A., Berry, G. J., Jain, M., Sedlazeck, F. J., Carroll, A., Paten, B. & Ashley, E. A., Apr 1 2022, In: Circulation: Cardiovascular Genetics. 15, 2, p. E003591

    Research output: Contribution to journal › Letter › peer-review

    Open Access
    2 Scopus citations

  • Segalign: A scalable gpu-based whole genome aligner

    Goenka, S. D., Turakhia, Y., Paten, B. & Horowitz, M., Nov 2020, Proceedings of SC 2020: International Conference for High Performance Computing, Networking, Storage and Analysis. IEEE Computer Society, 9355243. (International Conference for High Performance Computing, Networking, Storage and Analysis, SC; vol. 2020-November).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    12 Scopus citations
View all 6 Research outputs