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Research Output 1986 2020

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Article
2015
9 Citations (Scopus)

Full correlation matrix analysis (FCMA): An unbiased method for task-related functional connectivity

Wang, Y., Cohen, J. D., Li, K. & Turk-Browne, N., May 1 2015, In : Journal of Neuroscience Methods. 251, p. 108-119 12 p.

Research output: Contribution to journalArticle

Brain
Seeds
Multivariate Analysis
Benchmarking
Visual Cortex
47 Citations (Scopus)

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Zhu, Q., Wong, A. K., Krishnan, A., Aure, M. R., Tadych, A., Zhang, R., Corney, D. C., Greene, C. S., Bongo, L. A., Kristensen, V. N., Charikar, M., Li, K. & Troyanskaya, O. G., Feb 26 2015, In : Nature Methods. 12, 3, p. 211-214 4 p.

Research output: Contribution to journalArticle

Microarrays
Search engines
Metadata
Visualization
Genes
2011
21 Citations (Scopus)

Management of multilevel, multiclient cache hierarchies with application hints

Yadgar, G., Factor, M., Li, K. & Schuster, A., May 1 2011, In : ACM Transactions on Computer Systems. 29, 2, 5.

Research output: Contribution to journalArticle

Information management
2010
53 Citations (Scopus)

DFS: A file system for virtualized flash storage

Josephson, W. K., Bongo, L. A., Li, K. & Flynn, D., Sep 1 2010, In : ACM Transactions on Storage. 6, 3, 14.

Research output: Contribution to journalArticle

Virtual storage
Flash memory
Program processors
Data storage equipment
2009
27 Citations (Scopus)

Directing experimental biology: A case study in mitochondrial biogenesis

Hibbs, M. A., Myers, C. L., Huttenhower, C., Hess, D. C., Li, K., Caudy, A. A. & Troyanskaya, O. G., Mar 1 2009, In : PLoS computational biology. 5, 3

Research output: Contribution to journalArticle

Organelle Biogenesis
Biology
case studies
Biological Sciences
Genes
2008
15 Citations (Scopus)

HPP: An architecture for high performance and utility computing

Sun, N. H., Li, K. & Chen, M. Y., Sep 1 2008, In : Jisuanji Xuebao/Chinese Journal of Computers. 31, 9, p. 1503-1508 6 p.

Research output: Contribution to journalArticle

Program processors
Processing
Computer architecture
Computer operating systems
Communication
2007
171 Citations (Scopus)

Exploring the functional landscape of gene expression: Directed search of large microarray compendia

Hibbs, M. A., Hess, D. C., Myers, C. L., Huttenhower, C., Li, K. & Troyanskaya, O. G., Oct 15 2007, In : Bioinformatics. 23, 20, p. 2692-2699 8 p.

Research output: Contribution to journalArticle

Microarrays
Gene expression
Microarray
Gene Expression
Query
26 Citations (Scopus)

Simulation of fusion plasmas: Current status and future direction

Batchelor, D. A., Beck, M., Becoulet, A., Budny, R. V., Chang, C. S., Diamond, P. H., Dong, J. Q., Fu, G. Y., Fukuyama, A., Hahm, T. S., Keyes, D. E., Kishimoto, Y., Klasky, S., Lao, L. L., Li, K., Lin, Z., Ludaescher, B., Manickam, J., Nakajima, N., Ozeki, T. & 9 others, Podhorszki, N., Tang, W. M., Vouk, M. A., Waltz, R. E., Wang, S. J., Wilson, H. R., Xu, X. Q., Yagi, M. & Zonca, F., Jun 1 2007, In : Plasma Science and Technology. 9, 3, p. 312-387 76 p.

Research output: Contribution to journalArticle

plasma currents
fusion
simulation
2006
7 Citations (Scopus)
Wireless sensor networks
Fusion reactions
Network protocols
Sensor nodes
Sensor networks
2005
9 Citations (Scopus)

Bridging the Digital Divide: Storage Media + Postal Network = Generic High-Bandwidth Communication

Garg, N., Sobti, S., Lai, J., Zheng, F., Li, K., Wang, R. Y. & Krishnamurthy, A., May 1 2005, In : ACM Transactions on Storage. 1, 2, p. 246-275 30 p.

Research output: Contribution to journalArticle

Digital storage
Bandwidth
Communication
Internet
Takeoff
8 Citations (Scopus)

Memory performance optimizations for real-time software HDTV decoding

Chen, H., Li, K. & Wei, B., Sep 1 2005, In : Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology. 41, 2, p. 193-207 15 p.

Research output: Contribution to journalArticle

High definition television
Performance Optimization
MPEG-2
Program processors
Decoding
45 Citations (Scopus)

Tools and applications for large-scale display walls

Wallace, G., Anshus, O. J., Bi, P., Chen, H., Chen, Y., Clark, D., Cook, P., Finkelstein, A., Funkhouser, T. A., Gupta, A., Hibbs, M., Li, K., Liu, Z., Samanta, R., Sukthankar, R. & Troyanskaya, O. G., Jul 1 2005, In : IEEE Computer Graphics and Applications. 25, 4, p. 24-33 10 p.

Research output: Contribution to journalArticle

Display devices
Projection screens
Liquid crystal displays
Pixels
Processing
3 Citations (Scopus)

VI-attached database storage

Zhou, Y., Bilas, A., Jagannathan, S., Xinidis, D., Dubnicki, C. & Li, K., Jan 1 2005, In : IEEE Transactions on Parallel and Distributed Systems. 16, 1, p. 35-50 16 p.

Research output: Contribution to journalArticle

Program processors
Servers
Communication
Application programming interfaces (API)
Transparency
42 Citations (Scopus)

Visualization methods for statistical analysis of microarray clusters

Hibbs, M. A., Dirksen, N. C., Li, K. & Troyanskaya, O. G., May 12 2005, In : BMC bioinformatics. 6, 115.

Research output: Contribution to journalArticle

Microarray Analysis
Microarrays
Microarray
Statistical Analysis
Cluster Analysis
2004
3 Citations (Scopus)

Automatic alignment of tiled displays for a desktop environment

Wallace, G., Chen, H. & Li, K., Dec 1 2004, In : Ruan Jian Xue Bao/Journal of Software. 15, 12, p. 1776-1786 11 p.

Research output: Contribution to journalArticle

Display devices
Visualization
Pixels
Hardware
Degradation
20 Citations (Scopus)

Building the US National Fusion Grid: Results from the National Fusion Collaboratory Project

Schissel, D. P., Burruss, J. R., Finkelstein, A., Flanagan, S. M., Foster, I. T., Fredian, T. W., Greenwald, M. J., Johnson, C. R., Keahey, K., Klasky, S. A., Li, K., McCune, D. C., Papka, M., Peng, Q., Randerson, L., Sanderson, A., Stillerman, J., Stevens, R., Thompson, M. R. & Wallace, G., Jun 1 2004, In : Fusion Engineering and Design. 71, 1-4 SPEC. ISS., p. 245-250 6 p.

Research output: Contribution to journalArticle

Fusion reactions
Computer science
Visualization
Internet
1 Citation (Scopus)

Real-time concurrent collection on stock multiprocessors

Appel, A. W., Ellis, J. R. & Li, K., Apr 1 2004, In : ACM SIGPLAN Notices. 39, 4, p. 207-216 10 p.

Research output: Contribution to journalArticle

Data storage equipment
Copying
Computer hardware
92 Citations (Scopus)

Second-level buffer cache management

Zhou, Y., Chen, Z. & Li, K., Jun 1 2004, In : IEEE Transactions on Parallel and Distributed Systems. 15, 6, p. 505-519 15 p.

Research output: Contribution to journalArticle

Servers
Computer systems
Processing
2003

Dynamic memory management for programmable devices

Kumar, S. & Li, K., Feb 1 2003, In : ACM SIGPLAN Notices. 38, 2 SUPPL., p. 245-255 11 p.

Research output: Contribution to journalArticle

Data storage equipment
Firmware
Interfaces (computer)
Processing
Costs
2002
4 Citations (Scopus)

Data management, code deployment, and scientific visualization to enhance scientific discovery in fusion research through advanced computing

Schissel, D. P., Finkelstein, A., Foster, I. T., Fredian, T. W., Greenwald, M. J., Hansen, C. D., Johnson, C. R., Keahey, K., Klasky, S. A., Li, K., McCune, D. C., Peng, Q., Stevens, R. & Thompson, M. R., Jun 1 2002, In : Fusion Engineering and Design. 60, 3, p. 481-486 6 p.

Research output: Contribution to journalArticle

Data visualization
Information management
Fusion reactions
Distributed computer systems
Computer science
36 Citations (Scopus)

Experiences with VI communication for database storage

Zhou, Y., Bilas, A., Jagannathan, S., Dubnicki, C., Philbin, J. F. & Li, K., Jan 1 2002, In : Conference Proceedings - Annual International Symposium on Computer Architecture, ISCA. p. 257-268 12 p.

Research output: Contribution to journalArticle

Communication
Program processors
Servers
Application programming interfaces (API)
Transparency
11 Citations (Scopus)

Improving progressive view-dependent isosurface propagation

Liu, Z., Finkelstein, A. & Li, K., Apr 1 2002, In : Computers and Graphics (Pergamon). 26, 2, p. 209-218 10 p.

Research output: Contribution to journalArticle

Seed
Casting
2001
28 Citations (Scopus)

Data distribution strategies for high-resolution displays

Chen, H., Chen, Y., Finkelstein, A., Funkhouser, T. A., Li, K., Liu, Z., Samanta, R. & Wallace, G., Oct 1 2001, In : Computers and Graphics (Pergamon). 25, 5, p. 811-818 8 p.

Research output: Contribution to journalArticle

Display devices
Servers
Bandwidth
Data visualization
Image resolution

ESP: A language for programmable devices

Kumar, S., Mandelbaum, Y., Yu, X. & Li, K., May 1 2001, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 36, 5, p. 309-319 11 p.

Research output: Contribution to journalArticle

Firmware
Model checking
Interfaces (computer)
Specifications
2000
85 Citations (Scopus)

Building and using a scalable display wall system

Li, K., Chen, H., Chen, Y., Clark, D. W., Cook, P., Damianakis, S., Essl, G., Finkelstein, A., Funkhouser, T. A., Housel, T., Klein, A., Liu, Z., Praun, E., Samanta, R., Shedd, B., Singh, J. P., Tzanetakis, G. & Zheng, J., Jul 1 2000, In : IEEE Computer Graphics and Applications. 20, 4, p. 29-36 8 p.

Research output: Contribution to journalArticle

Local Area Networks
Resource Allocation
Microcomputers
Software
41 Citations (Scopus)

Large-format displays

Funkhouser, T. A. & Li, K., Dec 3 2000, In : IEEE Computer Graphics and Applications. 20, 4, p. 20-21 2 p.

Research output: Contribution to journalArticle

Display devices
Technology
Research
1999
57 Citations (Scopus)

Memory Exclusion: Optimizing the Performance of Checkpointing Systems

Plank, J. S., Chen, Y., Li, K., Beck, M. & Kingsley, G., Jan 1 1999, In : Software - Practice and Experience. 29, 2, p. 125-142 18 p.

Research output: Contribution to journalArticle

Data storage equipment
Costs
Experiments
32 Citations (Scopus)

OS support for general-purpose routers

Peterson, L. L., Karlin, S. C. & Li, K., Jan 1 1999, In : Proceedings of the Workshop on Hot Topics in Operating Systems - HOTOS. p. 38-43 6 p.

Research output: Contribution to journalArticle

Routers
Computer hardware
Computer operating systems
Software architecture
Communication systems
1998
238 Citations (Scopus)

Diskless checkpointing

Plank, J. S., Li, K. & Puening, M. A., Dec 1 1998, In : IEEE Transactions on Parallel and Distributed Systems. 9, 10, p. 972-986 15 p.

Research output: Contribution to journalArticle

Network performance
3 Citations (Scopus)

JTLB: A Mechanism for Address Translation on Network Interfaces

Chen, Y., Bilas, A., Damianakis, S. N., Dubnicki, C. & Li, K., Nov 1 1998, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 33, 11, p. 193-204 12 p.

Research output: Contribution to journalArticle

Interfaces (computer)
Physical addresses
Trace analysis
Data storage equipment
HIgh speed networks
12 Citations (Scopus)

Performance measurements for multithreaded programs

Ji, M., Felten, E. W. & Li, K., Jan 1 1998, In : Performance Evaluation Review. 26, 1, p. 161-170 10 p.

Research output: Contribution to journalArticle

Bandwidth
Program processors
Tuning
Throughput
Monitoring
16 Citations (Scopus)

Scope consistency: A bridge between release consistency and entry consistency

Iftode, L., Singh, J. P. & Li, K., Jan 1 1998, In : Theory of Computing Systems. 31, 4, p. 451-473 23 p.

Research output: Contribution to journalArticle

Synchronization
Data storage equipment
Update
Hardware
Programming
1 Citation (Scopus)

UTLB: A Mechanism for Address Translation on Network Interfaces

Chen, Y., Bilas, A., Damianakis, S. N., Dubnicki, C. & Li, K., Dec 1 1998, In : Operating Systems Review (ACM). 32, 5, p. 193-204 12 p.

Research output: Contribution to journalArticle

Interfaces (computer)
Physical addresses
Trace analysis
Data storage equipment
HIgh speed networks
1997
23 Citations (Scopus)

Design and implementation of virtual memory-mapped communication on Myrinet

Dubnicki, C., Bilas, A., Li, K. & Philbin, J., Jan 1 1997, In : Proceedings of the International Parallel Processing Symposium, IPPS. p. 388-396 9 p.

Research output: Contribution to journalArticle

Data storage equipment
Communication
Computer hardware
Interfaces (computer)
Bandwidth
8 Citations (Scopus)

Relaxed Consistency and Coherence Granularity in DSM Systems: A Performance Evaluation

Zhou, Y., Iftode, L., Singh, J. P., Li, K., Toonen, B. R., Schoinas, I., Hill, M. D. & Wood, D. A., Jan 1 1997, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 32, 7, p. 193-205 13 p.

Research output: Contribution to journalArticle

Network protocols
Access control
Computer hardware
Data storage equipment
1996
103 Citations (Scopus)

Implementation and Performance of Integrated Application-Controlled File Caching, Prefetching, and Disk Scheduling

Cao, P., Felten, E. W., Karlin, A. R. & Li, K., Jan 1 1996, In : ACM Transactions on Computer Systems. 14, 4, p. 311-343 33 p.

Research output: Contribution to journalArticle

Scheduling
Microprocessor chips
16 Citations (Scopus)

Integrated parallel prefetching and caching

Kimbrel, T., Cao, P., Felten, E. W., Karlin, A. R. & Li, K., Jan 1 1996, In : Performance Evaluation Review. 24, 1, p. 262-263 2 p.

Research output: Contribution to journalArticle

Magnetic disk storage
File organization
Buffer storage
Online systems
Parallel processing systems
32 Citations (Scopus)

Software support for virtual memory-mapped communication

Dubnicki, C., Iftode, L., Felten, E. W. & Li, K., Jan 1 1996, In : IEEE Symposium on Parallel and Distributed Processing - Proceedings. p. 372-381 10 p.

Research output: Contribution to journalArticle

Data storage equipment
Communication
Computer operating systems
Computer hardware
Interfaces (computer)
15 Citations (Scopus)

Thread scheduling for cache locality

Philbin, J., Edler, J., Anshus, O. J., Douglas, C. C. & Li, K., Oct 1 1996, In : Computer architecture news. 24, Special Issu, p. 60-71 12 p.

Research output: Contribution to journalArticle

Scheduling
Application programs
Experiments
20 Citations (Scopus)

Thread scheduling for cache locality

Philbin, J., Edler, J., Anshus, O. J., Douglas, C. C. & Li, K., Jan 1 1996, In : Operating Systems Review (ACM). 30, 5, p. 60-71 12 p.

Research output: Contribution to journalArticle

Scheduling
Application programs
Experiments
11 Citations (Scopus)

Thread scheduling for cache locality

Philbin, J., Edler, J., Anshus, O. J., Douglas, C. C. & Li, K., Jan 1 1996, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 31, 9, p. 60-71 12 p.

Research output: Contribution to journalArticle

Scheduling
Application programs
Experiments
30 Citations (Scopus)
Computer systems
Data storage equipment
Hardware
Network protocols
Communication
1995

Multiprocessor cache coherence based on virtual memory support

Petersen, K. & Li, K., Jan 1 1995, In : Journal of Parallel and Distributed Computing. 29, 2, p. 158-178 21 p.

Research output: Contribution to journalArticle

Cache Coherence
Virtual Memory
Multiprocessor
Data storage equipment
Trade-offs
43 Citations (Scopus)

Virtual-Memory-Mapped Network Interfaces

Blumrich, M. A., Dubnicki, C., Felten, E. W., Li, K. & Mesarina, M. R., Jan 1 1995, In : IEEE Micro. 15, 1, p. 21-28 8 p.

Research output: Contribution to journalArticle

Message passing
Interfaces (computer)
Data storage equipment
Communication
Costs
1994
61 Citations (Scopus)

Ickp: A Consistent Checkpointer for Multicomputers

Plank, J. S. & Li, K., Jan 1 1994, In : IEEE Parallel and Distributed Technology. 2, 2, p. 62-67 6 p.

Research output: Contribution to journalArticle

Multicomputers
78 Citations (Scopus)

Low-Latency, Concurrent Checkpointing for Parallel Programs

Li, K., Jan 1 1994, In : IEEE Transactions on Parallel and Distributed Systems. 5, 8, p. 874-879 6 p.

Research output: Contribution to journalArticle

Data storage equipment
1992
46 Citations (Scopus)

Heterogeneous Distributed Shared Memory

Zhou, S., Stumm, M., Wortman, D. & Li, K., Jan 1 1992, In : IEEE Transactions on Parallel and Distributed Systems. 3, 5, p. 540-554 15 p.

Research output: Contribution to journalArticle

Data storage equipment
Transparency
Communication
6 Citations (Scopus)

Software Support for Speculative Loads

Rogers, A. & Li, K., Jan 9 1992, In : ACM SIGPLAN Notices. 27, 9, p. 38-50 13 p.

Research output: Contribution to journalArticle

1991
10 Citations (Scopus)

An efficient checkpointing method for multicomputers with wormhole routing

Li, K., Naughton, J. F. & Plank, J. S., Jun 1 1991, In : International Journal of Parallel Programming. 20, 3, p. 159-180 22 p.

Research output: Contribution to journalArticle

Wormhole Routing
Checkpointing
Multicomputers
Network routing
Checkpoint
22 Citations (Scopus)

Virtual memory primitives for user programs

Appel, A. W. & Li, K., Jan 4 1991, In : ACM SIGPLAN Notices. 26, 4, p. 96-107 12 p.

Research output: Contribution to journalArticle

Computer operating systems
Data storage equipment
Memory management units