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Article
2015

Full correlation matrix analysis (FCMA): An unbiased method for task-related functional connectivity

Wang, Y., Cohen, J. D., Li, K. & Turk-Browne, N. B., May 1 2015, In : Journal of Neuroscience Methods. 251, p. 108-119 12 p.

Research output: Contribution to journalArticle

12 Scopus citations

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Zhu, Q., Wong, A. K., Krishnan, A., Aure, M. R., Tadych, A., Zhang, R., Corney, D. C., Greene, C. S., Bongo, L. A., Kristensen, V. N., Charikar, M., Li, K. & Troyanskaya, O. G., Feb 26 2015, In : Nature Methods. 12, 3, p. 211-214 4 p.

Research output: Contribution to journalArticle

57 Scopus citations
2011

Management of multilevel, multiclient cache hierarchies with application hints

Yadgar, G., Factor, M., Li, K. & Schuster, A., May 1 2011, In : ACM Transactions on Computer Systems. 29, 2, 5.

Research output: Contribution to journalArticle

23 Scopus citations
2010

DFS: A file system for virtualized flash storage

Josephson, W. K., Bongo, L. A., Li, K. & Flynn, D., Sep 1 2010, In : ACM Transactions on Storage. 6, 3, 14.

Research output: Contribution to journalArticle

64 Scopus citations
2009

Directing experimental biology: A case study in mitochondrial biogenesis

Hibbs, M. A., Myers, C. L., Huttenhower, C., Hess, D. C., Li, K., Caudy, A. A. & Troyanskaya, O. G., Mar 1 2009, In : PLoS computational biology. 5, 3

Research output: Contribution to journalArticle

28 Scopus citations
2008

HPP: An architecture for high performance and utility computing

Sun, N. H., Li, K. & Chen, M. Y., Sep 1 2008, In : Jisuanji Xuebao/Chinese Journal of Computers. 31, 9, p. 1503-1508 6 p.

Research output: Contribution to journalArticle

15 Scopus citations
2007

Exploring the functional landscape of gene expression: Directed search of large microarray compendia

Hibbs, M. A., Hess, D. C., Myers, C. L., Huttenhower, C., Li, K. & Troyanskaya, O. G., Oct 15 2007, In : Bioinformatics. 23, 20, p. 2692-2699 8 p.

Research output: Contribution to journalArticle

180 Scopus citations

Simulation of fusion plasmas: Current status and future direction

Batchelor, D. A., Beck, M., Becoulet, A., Budny, R. V., Chang, C. S., Diamond, P. H., Dong, J. Q., Fu, G. Y., Fukuyama, A., Hahm, T. S., Keyes, D. E., Kishimoto, Y., Klasky, S., Lao, L. L., Li, K., Lin, Z., Ludaescher, B., Manickam, J., Nakajima, N., Ozeki, T. & 9 others, Podhorszki, N., Tang, W. M., Vouk, M. A., Waltz, R. E., Wang, S. J., Wilson, H. R., Xu, X. Q., Yagi, M. & Zonca, F., Jun 1 2007, In : Plasma Science and Technology. 9, 3, p. 312-387 76 p.

Research output: Contribution to journalArticle

28 Scopus citations
2006
7 Scopus citations
2005

Bridging the Digital Divide: Storage Media + Postal Network = Generic High-Bandwidth Communication

Garg, N., Sobti, S., Lai, J., Zheng, F., Li, K., Wang, R. Y. & Krishnamurthy, A., May 1 2005, In : ACM Transactions on Storage. 1, 2, p. 246-275 30 p.

Research output: Contribution to journalArticle

9 Scopus citations

Memory performance optimizations for real-time software HDTV decoding

Chen, H., Li, K. & Wei, B., Sep 1 2005, In : Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology. 41, 2, p. 193-207 15 p.

Research output: Contribution to journalArticle

8 Scopus citations

Tools and applications for large-scale display walls

Wallace, G., Anshus, O. J., Bi, P., Chen, H., Chen, Y., Clark, D., Cook, P., Finkelstein, A., Funkhouser, T. A., Gupta, A., Hibbs, M., Li, K., Liu, Z., Samanta, R., Sukthankar, R. & Troyanskaya, O. G., Jul 1 2005, In : IEEE Computer Graphics and Applications. 25, 4, p. 24-33 10 p.

Research output: Contribution to journalArticle

47 Scopus citations

VI-attached database storage

Zhou, Y., Bilas, A., Jagannathan, S., Xinidis, D., Dubnicki, C. & Li, K., Jan 1 2005, In : IEEE Transactions on Parallel and Distributed Systems. 16, 1, p. 35-50 16 p.

Research output: Contribution to journalArticle

3 Scopus citations

Visualization methods for statistical analysis of microarray clusters

Hibbs, M. A., Dirksen, N. C., Li, K. & Troyanskaya, O. G., May 12 2005, In : BMC bioinformatics. 6, 115.

Research output: Contribution to journalArticle

43 Scopus citations
2004

Automatic alignment of tiled displays for a desktop environment

Wallace, G., Chen, H. & Li, K., Dec 1 2004, In : Ruan Jian Xue Bao/Journal of Software. 15, 12, p. 1776-1786 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Building the US National Fusion Grid: Results from the National Fusion Collaboratory Project

Schissel, D. P., Burruss, J. R., Finkelstein, A., Flanagan, S. M., Foster, I. T., Fredian, T. W., Greenwald, M. J., Johnson, C. R., Keahey, K., Klasky, S. A., Li, K., McCune, D. C., Papka, M., Peng, Q., Randerson, L., Sanderson, A., Stillerman, J., Stevens, R., Thompson, M. R. & Wallace, G., Jun 1 2004, In : Fusion Engineering and Design. 71, 1-4 SPEC. ISS., p. 245-250 6 p.

Research output: Contribution to journalArticle

21 Scopus citations

Real-time concurrent collection on stock multiprocessors

Appel, A. W., Ellis, J. R. & Li, K., Apr 1 2004, In : ACM SIGPLAN Notices. 39, 4, p. 207-216 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Second-level buffer cache management

Zhou, Y., Chen, Z. & Li, K., Jun 1 2004, In : IEEE Transactions on Parallel and Distributed Systems. 15, 6, p. 505-519 15 p.

Research output: Contribution to journalArticle

101 Scopus citations
2003

Dynamic memory management for programmable devices

Kumar, S. & Li, K., Feb 1 2003, In : ACM SIGPLAN Notices. 38, 2 SUPPL., p. 245-255 11 p.

Research output: Contribution to journalArticle

2002

Data management, code deployment, and scientific visualization to enhance scientific discovery in fusion research through advanced computing

Schissel, D. P., Finkelstein, A., Foster, I. T., Fredian, T. W., Greenwald, M. J., Hansen, C. D., Johnson, C. R., Keahey, K., Klasky, S. A., Li, K., McCune, D. C., Peng, Q., Stevens, R. & Thompson, M. R., Jun 1 2002, In : Fusion Engineering and Design. 60, 3, p. 481-486 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

Experiences with VI communication for database storage

Zhou, Y., Bilas, A., Jagannathan, S., Dubnicki, C., Philbin, J. F. & Li, K., Jan 1 2002, In : Conference Proceedings - Annual International Symposium on Computer Architecture, ISCA. p. 257-268 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Improving progressive view-dependent isosurface propagation

Liu, Z., Finkelstein, A. & Li, K., Apr 2002, In : Computers and Graphics (Pergamon). 26, 2, p. 209-218 10 p.

Research output: Contribution to journalArticle

11 Scopus citations
2001

Data distribution strategies for high-resolution displays

Chen, H., Chen, Y., Finkelstein, A., Funkhouser, T., Li, K., Liu, Z., Samanta, R. & Wallace, G., Oct 2001, In : Computers and Graphics (Pergamon). 25, 5, p. 811-818 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

ESP: A language for programmable devices

Kumar, S., Mandelbaum, Y., Yu, X. & Li, K., May 1 2001, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 36, 5, p. 309-319 11 p.

Research output: Contribution to journalArticle

2000

Building and using a scalable display wall system

Li, K., Chen, H., Chen, Y., Clark, D. W., Cook, P., Damianakis, S., Essl, G., Finkelstein, A., Funkhouser, T. A., Housel, T., Klein, A., Liu, Z., Praun, E., Samanta, R., Shedd, B., Singh, J. P., Tzanetakis, G. & Zheng, J., Jul 1 2000, In : IEEE Computer Graphics and Applications. 20, 4, p. 29-36 8 p.

Research output: Contribution to journalArticle

86 Scopus citations

Large-format displays

Funkhouser, T. & Li, K., Dec 3 2000, In : IEEE Computer Graphics and Applications. 20, 4, p. 20-21 2 p.

Research output: Contribution to journalArticle

41 Scopus citations
1999

Memory Exclusion: Optimizing the Performance of Checkpointing Systems

Plank, J. S., Chen, Y., Li, K., Beck, M. & Kingsley, G., Feb 1999, In : Software - Practice and Experience. 29, 2, p. 125-142 18 p.

Research output: Contribution to journalArticle

57 Scopus citations
1998

Diskless checkpointing

Plank, J. S., Li, K. & Puening, M. A., Dec 1 1998, In : IEEE Transactions on Parallel and Distributed Systems. 9, 10, p. 972-986 15 p.

Research output: Contribution to journalArticle

243 Scopus citations

JTLB: A Mechanism for Address Translation on Network Interfaces

Chen, Y., Bilas, A., Damianakis, S. N., Dubnicki, C. & Li, K., Nov 1 1998, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 33, 11, p. 193-204 12 p.

Research output: Contribution to journalArticle

3 Scopus citations

Performance measurements for multithreaded programs

Ji, M., Felten, E. W. & Li, K., Jun 1998, In : Performance Evaluation Review. 26, 1, p. 161-170 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Scope consistency: A bridge between release consistency and entry consistency

Iftode, L., Singh, J. P. & Li, K., Jan 1 1998, In : Theory of Computing Systems. 31, 4, p. 451-473 23 p.

Research output: Contribution to journalArticle

16 Scopus citations

UTLB: A Mechanism for Address Translation on Network Interfaces

Chen, Y., Bilas, A., Damianakis, S. N., Dubnicki, C. & Li, K., Dec 1 1998, In : Operating Systems Review (ACM). 32, 5, p. 193-204 12 p.

Research output: Contribution to journalArticle

1 Scopus citations
1997

Relaxed Consistency and Coherence Granularity in DSM Systems: A Performance Evaluation

Zhou, Y., Iftode, L., Singh, J. P., Li, K., Toonen, B. R., Schoinas, I., Hill, M. D. & Wood, D. A., Jul 1997, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 32, 7, p. 193-205 13 p.

Research output: Contribution to journalArticle

8 Scopus citations
1996

Implementation and Performance of Integrated Application-Controlled File Caching, Prefetching, and Disk Scheduling

Cao, P., Felten, E. W., Karlin, A. R. & Li, K., Nov 1996, In : ACM Transactions on Computer Systems. 14, 4, p. 311-343 33 p.

Research output: Contribution to journalArticle

116 Scopus citations

Integrated parallel prefetching and caching

Kimbrel, T., Cao, P., Felten, E. W., Karlin, A. R. & Li, K., May 1996, In : Performance Evaluation Review. 24, 1, p. 262-263 2 p.

Research output: Contribution to journalArticle

17 Scopus citations

Thread scheduling for cache locality

Philbin, J., Edler, J., Anshus, O. J., Douglas, C. C. & Li, K., Sep 1996, In : SIGPLAN Notices (ACM Special Interest Group on Programming Languages). 31, 9, p. 60-71 12 p.

Research output: Contribution to journalArticle

11 Scopus citations

Thread scheduling for cache locality

Philbin, J., Edler, J., Anshus, O. J., Douglas, C. C. & Li, K., Oct 1 1996, In : Computer architecture news. 24, Special Issu, p. 60-71 12 p.

Research output: Contribution to journalArticle

15 Scopus citations

Thread scheduling for cache locality

Philbin, J., Edler, J., Anshus, O. J., Douglas, C. C. & Li, K., Dec 1996, In : Operating Systems Review (ACM). 30, 5, p. 60-71 12 p.

Research output: Contribution to journalArticle

20 Scopus citations
1995

Multiprocessor cache coherence based on virtual memory support

Petersen, K. & Li, K., Sep 1995, In : Journal of Parallel and Distributed Computing. 29, 2, p. 158-178 21 p.

Research output: Contribution to journalArticle

Virtual-Memory-Mapped Network Interfaces

Blumrich, M. A., Dubnicki, C., Felten, E. W., Li, K. & Mesarina, M. R., Feb 1995, In : IEEE Micro. 15, 1, p. 21-28 8 p.

Research output: Contribution to journalArticle

44 Scopus citations
1994

Ickp: A Consistent Checkpointer for Multicomputers

Plank, J. S. & Li, K., Jan 1 1994, In : IEEE Parallel and Distributed Technology. 2, 2, p. 62-67 6 p.

Research output: Contribution to journalArticle

64 Scopus citations

Low-Latency, Concurrent Checkpointing for Parallel Programs

Li, K., Aug 1994, In : IEEE Transactions on Parallel and Distributed Systems. 5, 8, p. 874-879 6 p.

Research output: Contribution to journalArticle

81 Scopus citations
1992

Heterogeneous Distributed Shared Memory

Zhou, S., Stumm, M., Wortman, D. & Li, K., Sep 1992, In : IEEE Transactions on Parallel and Distributed Systems. 3, 5, p. 540-554 15 p.

Research output: Contribution to journalArticle

46 Scopus citations

Software Support for Speculative Loads

Rogers, A. & Li, K., Jan 9 1992, In : ACM SIGPLAN Notices. 27, 9, p. 38-50 13 p.

Research output: Contribution to journalArticle

7 Scopus citations
1991

An efficient checkpointing method for multicomputers with wormhole routing

Li, K., Naughton, J. F. & Plank, J. S., Jun 1 1991, In : International Journal of Parallel Programming. 20, 3, p. 159-180 22 p.

Research output: Contribution to journalArticle

10 Scopus citations

Virtual memory primitives for user programs

Appel, A. W. & Li, K., Jan 4 1991, In : ACM SIGPLAN Notices. 26, 4, p. 96-107 12 p.

Research output: Contribution to journalArticle

29 Scopus citations
1990

Real-Time, Concurrent Checkpoint for Parallel Programs

Li, K., Naughton, J. F. & Plank, J. S., Jan 2 1990, In : ACM SIGPLAN Notices. 25, 3, p. 79-88 10 p.

Research output: Contribution to journalArticle

43 Scopus citations
1989

Memory Coherence in Shared Virtual Memory Systems

Li, K. & Hudak, P., Jan 11 1989, In : ACM Transactions on Computer Systems (TOCS). 7, 4, p. 321-359 39 p.

Research output: Contribution to journalArticle

556 Scopus citations
1988

Real-time Concurrent Collection on Stock Multiprocessors

Appel, A. W., Ellis, J. R. & Li, K., Jul 1 1988, In : ACM SIGPLAN Notices. 23, 7, p. 11-20 10 p.

Research output: Contribution to journalArticle

18 Scopus citations
1986

A new list compaction method

Li, K. & Hudak, P., Feb 1986, In : Software: Practice and Experience. 16, 2, p. 145-163 19 p.

Research output: Contribution to journalArticle

5 Scopus citations