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Research Output 1986 2020

2020

PZnet: Efficient 3D ConvNet Inference on Manycore CPUs

Popovych, S., Buniatyan, D., Zlateski, A., Li, K. & Seung, H. S., Jan 1 2020, Advances in Computer Vision - Proceedings of the 2019 Computer Vision Conference CVC. Kapoor, S. & Arai, K. (eds.). Springer Verlag, p. 369-383 15 p. (Advances in Intelligent Systems and Computing; vol. 943).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Program processors
Convolution
Magnetic resonance imaging
Image analysis
Microscopic examination
2019

Compressed Sensing MRI Reconstruction on Intel HARPv2

Su, Y., Anderson, M., Tamir, J. I., Lustig, M. & Li, K., Apr 1 2019, Proceedings - 27th IEEE International Symposium on Field-Programmable Custom Computing Machines, FCCM 2019. Institute of Electrical and Electronics Engineers Inc., p. 254-257 4 p. 8735528. (Proceedings - 27th IEEE International Symposium on Field-Programmable Custom Computing Machines, FCCM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Compressed sensing
Magnetic resonance imaging
Field programmable gate arrays (FPGA)
Image reconstruction
Particle accelerators
2018
1 Citation (Scopus)

Optimizing N-dimensional, winograd-based convolution for manycore CPUs

Jia, Z., Zlateski, A., Durand, F. & Li, K., Feb 10 2018, PPoPP 2018 - Proceedings of the 23rd Principles and Practice of Parallel Programming. Association for Computing Machinery, p. 109-123 15 p. (Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Convolution
Program processors
Computer hardware
Computational complexity
Experiments
2017
39 Citations (Scopus)

Computational approaches to fMRI analysis

Cohen, J. D., Daw, N. D., Engelhardt Martin, B., Hasson, U., Li, K., Niv, Y., Norman, K. A., Pillow, J. W., Ramadge, P. J., Turk-Browne, N. & Willke, T. L., Feb 23 2017, In : Nature Neuroscience. 20, 3, p. 304-313 10 p.

Research output: Contribution to journalReview article

Magnetic Resonance Imaging
Cognition
Joints
Brain
1 Citation (Scopus)

Intelligent probing for locality sensitive hashing: Multi-probe LSH and beyond

Lv, Q., Josephson, W., Wang, Z., Charikar, M. & Li, K., Aug 1 2017, In : Proceedings of the VLDB Endowment. 10, 12, p. 2021-2024 4 p.

Research output: Contribution to journalConference article

Explosions
Nearest neighbor search
2016
3 Citations (Scopus)

Real-time full correlation matrix analysis of fMRI data

Wang, Y., Keller, B., Capota, M., Anderson, M. J., Sundaram, N., Cohen, J. D., Li, K., Turk-Browne, N. & Willke, T. L., Jan 1 2016, Proceedings - 2016 IEEE International Conference on Big Data, Big Data 2016. Ak, R., Karypis, G., Xia, Y., Hu, X. T., Yu, P. S., Joshi, J., Ungar, L., Liu, L., Sato, A-H., Suzumura, T., Rachuri, S., Govindaraju, R. & Xu, W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1242-1251 10 p. 7840728. (Proceedings - 2016 IEEE International Conference on Big Data, Big Data 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain
Processing
Learning systems
Feature extraction
Magnetic Resonance Imaging
2015
9 Citations (Scopus)

Full correlation matrix analysis (FCMA): An unbiased method for task-related functional connectivity

Wang, Y., Cohen, J. D., Li, K. & Turk-Browne, N., May 1 2015, In : Journal of Neuroscience Methods. 251, p. 108-119 12 p.

Research output: Contribution to journalArticle

Brain
Seeds
Multivariate Analysis
Benchmarking
Visual Cortex
8 Citations (Scopus)

Full correlation matrix analysis of fMRI data on Intel Xeon Phi coprocessors

Wang, Y., Anderson, M. J., Cohen, J. D., Heinecke, A., Li, K., Satish, N., Sundaram, N., Turk-Browne, N. & Willke, T. L., Nov 15 2015, Proceedings of SC 2015: The International Conference for High Performance Computing, Networking, Storage and Analysis. IEEE Computer Society, a23. (International Conference for High Performance Computing, Networking, Storage and Analysis, SC; vol. 15-20-November-2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain
Experiments
Magnetic Resonance Imaging
Coprocessor
47 Citations (Scopus)

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Zhu, Q., Wong, A. K., Krishnan, A., Aure, M. R., Tadych, A., Zhang, R., Corney, D. C., Greene, C. S., Bongo, L. A., Kristensen, V. N., Charikar, M., Li, K. & Troyanskaya, O. G., Feb 26 2015, In : Nature Methods. 12, 3, p. 211-214 4 p.

Research output: Contribution to journalArticle

Microarrays
Search engines
Metadata
Visualization
Genes
2014
1 Citation (Scopus)

Author retrospective for search and replication in unstructured peer-to-peer networks

Lv, Q., Cao, P., Cohen, E., Li, K. & Shenker, S., Jan 1 2014, ICS 2014 - Proceedings of the 28th ACM InternationaI Conference on Supercomputing. Association for Computing Machinery, 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Peer to peer networks
8 Citations (Scopus)

Search and replication in unstructured peer-to-peer networks

Lv, Q., Cao, P., Cohen, E., Li, K. & Shenker, S., Jun 10 2014, ICS 2014 - Proceedings of the 28th ACM InternationaI Conference on Supercomputing. Banerjee, U. (ed.). Association for Computing Machinery, p. 335-346 12 p. (Proceedings of the International Conference on Supercomputing).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Peer to peer networks
Topology
2012
14 Citations (Scopus)

Characteristics of workloads using the pipeline programming model

Bienia, C. & Li, K., Mar 8 2012, Computer Architecture - ISCA 2010 International Workshops, A4MMC, AMAS-BT, EAMA, WEED, WIOSCA, Revised Selected Papers. p. 161-171 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6161 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer programming
Programming Model
Workload
Pipelines
Multiprocessor
23 Citations (Scopus)

High-confidence near-duplicate image detection

Dong, W., Wang, Z., Charikar, M. & Li, K., Jul 27 2012, Proceedings of the 2nd ACM International Conference on Multimedia Retrieval, ICMR 2012. (Proceedings of the 2nd ACM International Conference on Multimedia Retrieval, ICMR 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Search engines
Data structures
Entropy
Servers

Multimedia Web Search Based on a Novel Similarity Search System

Li, K., Charikar, M. & Lv, Q., Apr 18 2012

Research output: Innovation

2011
166 Citations (Scopus)

Efficient K-nearest neighbor graph construction for generic similarity measures

Dong, W., Charikar, M. & Li, K., Dec 1 2011, Proceedings of the 20th International Conference on World Wide Web, WWW 2011. p. 577-586 10 p. (Proceedings of the 20th International Conference on World Wide Web, WWW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Collaborative filtering
Data mining
Data structures
Learning systems
21 Citations (Scopus)

Management of multilevel, multiclient cache hierarchies with application hints

Yadgar, G., Factor, M., Li, K. & Schuster, A., May 1 2011, In : ACM Transactions on Computer Systems. 29, 2, 5.

Research output: Contribution to journalArticle

Information management
2010
53 Citations (Scopus)

DFS: A file system for virtualized flash storage

Josephson, W. K., Bongo, L. A., Li, K. & Flynn, D., Sep 1 2010, In : ACM Transactions on Storage. 6, 3, 14.

Research output: Contribution to journalArticle

Virtual storage
Flash memory
Program processors
Data storage equipment
33 Citations (Scopus)

Fidelity and scaling of the PARSEC benchmark inputs

Bienia, C. & Li, K., Dec 1 2010, IEEE International Symposium on Workload Characterization, IISWC'10. 5649519. (IEEE International Symposium on Workload Characterization, IISWC'10).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Scaling of the PARSEC benchmark inputs

Bienia, C. & Li, K., Nov 12 2010, PACT'10 - Proceedings of the 19th International Conference on Parallel Architectures and Compilation Techniques. p. 561-562 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Scaling
Benchmark
Simulation
Approximation Error
Fidelity
183 Citations (Scopus)

What does classifying more than 10,000 image categories tell us?

Deng, J., Berg, A. C., Li, K. & Fei-Fei, L., Nov 15 2010, Computer Vision, ECCV 2010 - 11th European Conference on Computer Vision, Proceedings. PART 5 ed. p. 71-84 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6315 LNCS, no. PART 5).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Categorization
Semantics
Image classification
Computer vision
WordNet
2009
27 Citations (Scopus)

Directing experimental biology: A case study in mitochondrial biogenesis

Hibbs, M. A., Myers, C. L., Huttenhower, C., Hess, D. C., Li, K., Caudy, A. A. & Troyanskaya, O. G., Mar 1 2009, In : PLoS computational biology. 5, 3

Research output: Contribution to journalArticle

Organelle Biogenesis
Biology
case studies
Biological Sciences
Genes
2008
62 Citations (Scopus)

Asymmetric distance estimation with sketches for similarity search in high-dimensional spaces

Dong, W., Charikar, M. & Li, K., Dec 15 2008, ACM SIGIR 2008 - 31st Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, Proceedings. p. 123-130 8 p. (ACM SIGIR 2008 - 31st Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Content based retrieval
Telephone
44 Citations (Scopus)

Efficiently matching sets of features with random histograms

Dong, W., Wang, Z., Charikar, M. & Li, K., Dec 1 2008, MM'08 - Proceedings of the 2008 ACM International Conference on Multimedia, with co-located Symposium and Workshops. p. 179-188 10 p. (MM'08 - Proceedings of the 2008 ACM International Conference on Multimedia, with co-located Symposium and Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Object recognition
Search engines
15 Citations (Scopus)

HPP: An architecture for high performance and utility computing

Sun, N. H., Li, K. & Chen, M. Y., Sep 1 2008, In : Jisuanji Xuebao/Chinese Journal of Computers. 31, 9, p. 1503-1508 6 p.

Research output: Contribution to journalArticle

Program processors
Processing
Computer architecture
Computer operating systems
Communication
26 Citations (Scopus)

MC2: Multiple clients on a multilevel cache

Yadgar, G., Factor, M., Li, K. & Schuster, A., Sep 22 2008, Proceedings - The 28th International Conference on Distributed Computing Systems, ICDCS 2008. p. 722-730 9 p. 4595947. (Proceedings - The 28th International Conference on Distributed Computing Systems, ICDCS 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

88 Citations (Scopus)

Modeling LSH for performance tuning

Dong, W., Wang, Z., Josephson, W., Charikar, M. & Li, K., Dec 1 2008, Proceedings of the 17th ACM Conference on Information and Knowledge Management, CIKM'08. p. 669-678 10 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Locality
Similarity search
Standard deviation
Latency
134 Citations (Scopus)

PARSEC vs. SPLASH-2: A quantitative comparison of two multithreaded benchmark suites on chip-multiprocessors

Bienia, C., Kumar, S. & Li, K., Nov 26 2008, 2008 IEEE International Symposium on Workload Characterization, IISWC'08. p. 47-56 10 p. 4636090. (2008 IEEE International Symposium on Workload Characterization, IISWC'08).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Redundancy
Learning systems
Statistical methods
1906 Citations (Scopus)

The PARSEC benchmark suite: Characterization and architectural implications

Bienia, C., Kumar, S., Singh, J. P. & Li, K., Dec 1 2008, PACT'08: Proceedings of the 17th International Conference on Parallel Architectures and Compilation Techniques. p. 72-81 10 p. (Parallel Architectures and Compilation Techniques - Conference Proceedings, PACT).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Shared Memory
Repository
Benchmark
Data storage equipment
Synchronization
37 Citations (Scopus)

Towards scalable dataset construction: An active learning approach

Collins, B., Deng, J., Li, K. & Fei-Fei, L., Dec 10 2008, Computer Vision - ECCV 2008 - 10th European Conference on Computer Vision, Proceedings. PART 1 ed. p. 86-98 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5302 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Active Learning
Scalability
Computer vision
Online Learning
Internet
2007
171 Citations (Scopus)

Exploring the functional landscape of gene expression: Directed search of large microarray compendia

Hibbs, M. A., Hess, D. C., Myers, C. L., Huttenhower, C., Li, K. & Troyanskaya, O. G., Oct 15 2007, In : Bioinformatics. 23, 20, p. 2692-2699 8 p.

Research output: Contribution to journalArticle

Microarrays
Gene expression
Microarray
Gene Expression
Query
60 Citations (Scopus)

Filtering image spam with near-duplicate detection

Wang, Z., Josephson, W., Lv, Q., Charikar, M. & Li, K., Jan 1 2007.

Research output: Contribution to conferencePaper

Electronic mail
Optical character recognition
484 Citations (Scopus)

Multi-probe LSH: Efficient indexing for high-dimensional similarity search

Lv, Q., Josephson, W., Wang, Z., Charikar, M. & Li, K., Jan 1 2007, 33rd International Conference on Very Large Data Bases, VLDB 2007 - Conference Proceedings. Gehrke, J., Koch, C., Garofalakis, M., Aberer, K., Kanne, C-C., Neuhold, E. J., Ganti, V., Klas, W., Chan, C-Y., Srivastava, D., Florescu, D. & Deshpande, A. (eds.). Association for Computing Machinery, Inc, p. 950-961 12 p. (33rd International Conference on Very Large Data Bases, VLDB 2007 - Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Entropy
Similarity search
Indexing
Locality
Sensors

Scalable, dynamic analysis and visualization for genomic datasets

Wallace, G., Hibbs, M., Dunham, M., Sealfon, R., Troyanskaya, O. G. & Li, K., Sep 25 2007, Proceedings - 21st International Parallel and Distributed Processing Symposium, IPDPS 2007; Abstracts and CD-ROM. 4228257. (Proceedings - 21st International Parallel and Distributed Processing Symposium, IPDPS 2007; Abstracts and CD-ROM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data visualization
Data Visualization
Dynamic Analysis
Dynamic analysis
Genomics
26 Citations (Scopus)

Simulation of fusion plasmas: Current status and future direction

Batchelor, D. A., Beck, M., Becoulet, A., Budny, R. V., Chang, C. S., Diamond, P. H., Dong, J. Q., Fu, G. Y., Fukuyama, A., Hahm, T. S., Keyes, D. E., Kishimoto, Y., Klasky, S., Lao, L. L., Li, K., Lin, Z., Ludaescher, B., Manickam, J., Nakajima, N., Ozeki, T. & 9 others, Podhorszki, N., Tang, W. M., Vouk, M. A., Waltz, R. E., Wang, S. J., Wilson, H. R., Xu, X. Q., Yagi, M. & Zonca, F., Jun 1 2007, In : Plasma Science and Technology. 9, 3, p. 312-387 76 p.

Research output: Contribution to journalArticle

plasma currents
fusion
simulation
19 Citations (Scopus)

Sizing sketches: A rank-based analysis for similarity search

Wang, Z., Dong, W., Josephson, W., Lv, Q., Charikar, M. & Li, K., Nov 29 2007, SIGMETRICS'07 - Proceedings of the 2007 International Conference on Measurement and Modeling of Computer Systems. 1 ed. p. 157-168 12 p. (Performance Evaluation Review; vol. 35, no. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hamming distance
Search engines
Metadata
Data structures
Analytical models

Systems support for remote visualization of genomics applications over wide area networks

Bongo, L. A., Wallace, G., Larsen, T., Li, K. & Troyanskaya, O. G., Aug 3 2007, Distributed, High-Performance and Grid Computing in Computational Biology International Workshop, GCCB 2006, Proceedings. p. 157-174 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4360 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Wide area networks
Genomics
Visualization
Microarrays
Microarray Data
9 Citations (Scopus)

Viewing the larger context of genomic data through horizontal integration

Hibbs, M., Wallace, G., Dunham, M., Li, K. & Troyanskaya, O. G., Oct 23 2007, In : Proceedings of the International Conference on Information Visualisation. p. 326-332 7 p., 4272001.

Research output: Contribution to journalConference article

Microarrays
Visualization
Data visualization
Gene expression
Display devices
2006
5 Citations (Scopus)

Efficient filtering with sketches in the ferret toolkit

Lv, Q., Josephson, W., Wang, Z., Charikar, M. & Li, K., Dec 1 2006, Proceedings of the 8th ACM Multimedia International Workshop on Multimedia Information Retrieval, MIR 2006. p. 279-288 10 p. (Proceedings of the ACM International Multimedia Conference and Exhibition).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Approximation algorithms
Search engines
Analytical models
Data storage equipment
Experiments
22 Citations (Scopus)

Ferret: A toolkit for content-based similarity search of feature-rich data

Lv, Q., Josephson, W., Wang, Z., Charikar, M. & Li, K., Dec 1 2006, Proceedings of the 2006 EuroSys Conference. p. 317-330 14 p. 1217966. (Proceedings of the 2006 EuroSys Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Audio recordings
Search engines
Microarrays
Data structures
Sensors
7 Citations (Scopus)
Wireless sensor networks
Fusion reactions
Network protocols
Sensor nodes
Sensor networks
12 Citations (Scopus)

VFerret: Content-based similarity search tool for continuous archived video

Wang, Z., Hoffman, M. D., Cook, P. R. & Li, K., Dec 1 2006, Proceedings of the 3rd ACM Workshop on Continuous Archival and Retrieval of Personal Experiences, CARPE'06. p. 19-25 7 p. (Proceedings of the 3rd ACM Workshop on Continuous Archival and Retrievalof Personal Experiences, CARPE'06).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metadata
Data storage equipment
2005
9 Citations (Scopus)

Bridging the Digital Divide: Storage Media + Postal Network = Generic High-Bandwidth Communication

Garg, N., Sobti, S., Lai, J., Zheng, F., Li, K., Wang, R. Y. & Krishnamurthy, A., May 1 2005, In : ACM Transactions on Storage. 1, 2, p. 246-275 30 p.

Research output: Contribution to journalArticle

Digital storage
Bandwidth
Communication
Internet
Takeoff
3 Citations (Scopus)

Dynamic scalable visualization for collaborative scientific applications

Li, K., Hibbs, M., Wallace, G. & Troyanskaya, O. G., Dec 1 2005, Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005. 1420140. (Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data visualization
Visualization
Physics
Productivity
Display devices
8 Citations (Scopus)

Memory performance optimizations for real-time software HDTV decoding

Chen, H., Li, K. & Wei, B., Sep 1 2005, In : Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology. 41, 2, p. 193-207 15 p.

Research output: Contribution to journalArticle

High definition television
Performance Optimization
MPEG-2
Program processors
Decoding
45 Citations (Scopus)

Tools and applications for large-scale display walls

Wallace, G., Anshus, O. J., Bi, P., Chen, H., Chen, Y., Clark, D., Cook, P., Finkelstein, A., Funkhouser, T. A., Gupta, A., Hibbs, M., Li, K., Liu, Z., Samanta, R., Sukthankar, R. & Troyanskaya, O. G., Jul 1 2005, In : IEEE Computer Graphics and Applications. 25, 4, p. 24-33 10 p.

Research output: Contribution to journalArticle

Display devices
Projection screens
Liquid crystal displays
Pixels
Processing
3 Citations (Scopus)

VI-attached database storage

Zhou, Y., Bilas, A., Jagannathan, S., Xinidis, D., Dubnicki, C. & Li, K., Jan 1 2005, In : IEEE Transactions on Parallel and Distributed Systems. 16, 1, p. 35-50 16 p.

Research output: Contribution to journalArticle

Program processors
Servers
Communication
Application programming interfaces (API)
Transparency
42 Citations (Scopus)

Visualization methods for statistical analysis of microarray clusters

Hibbs, M. A., Dirksen, N. C., Li, K. & Troyanskaya, O. G., May 12 2005, In : BMC bioinformatics. 6, 115.

Research output: Contribution to journalArticle

Microarray Analysis
Microarrays
Microarray
Statistical Analysis
Cluster Analysis
2004
3 Citations (Scopus)

Automatic alignment of tiled displays for a desktop environment

Wallace, G., Chen, H. & Li, K., Dec 1 2004, In : Ruan Jian Xue Bao/Journal of Software. 15, 12, p. 1776-1786 11 p.

Research output: Contribution to journalArticle

Display devices
Visualization
Pixels
Hardware
Degradation
20 Citations (Scopus)

Building the US National Fusion Grid: Results from the National Fusion Collaboratory Project

Schissel, D. P., Burruss, J. R., Finkelstein, A., Flanagan, S. M., Foster, I. T., Fredian, T. W., Greenwald, M. J., Johnson, C. R., Keahey, K., Klasky, S. A., Li, K., McCune, D. C., Papka, M., Peng, Q., Randerson, L., Sanderson, A., Stillerman, J., Stevens, R., Thompson, M. R. & Wallace, G., Jun 1 2004, In : Fusion Engineering and Design. 71, 1-4 SPEC. ISS., p. 245-250 6 p.

Research output: Contribution to journalArticle

Fusion reactions
Computer science
Visualization
Internet
1 Citation (Scopus)

Fast paths in concurrent programs

Xu, W., Kumar, S. & Li, K., Dec 27 2004, In : Parallel Architectures and Compilation Techniques - Conference Proceedings, PACT. p. 189-200 12 p.

Research output: Contribution to journalConference article

Firmware
Concurrent
Path
Automata
Symbolic Execution