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Research Output

2020

Visual cue-related activity of cells in the medial entorhinal cortex during navigation in virtual reality

Kinkhabwala, A. A., Gu, Y., Aronov, D. & Tank, D. W., Mar 9 2020, In : eLife. 9

Research output: Contribution to journalArticle

Open Access
2019

CaImAn an open source tool for scalable calcium imaging data analysis

Giovannucci, A., Friedrich, J., Gunn, P., Kalfon, J., Brown, B. L., Koay, S. A., Taxidis, J., Najafi, F., Gauthier, J. L., Zhou, P., Khakh, B. S., Tank, D. W., Chklovskii, D. B. & Pnevmatikakis, E. A., Jan 17 2019, In : eLife. 8

Research output: Contribution to journalArticle

23 Scopus citations

Cerebellar disruption impairs working memory during evidence accumulation

Deverett, B., Kislin, M., Tank, D. W. & Wang, S. S. H., Dec 1 2019, In : Nature communications. 10, 1, 3128.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Coarse graining, fixed points, and scaling in a large population of neurons

Meshulam, L., Gauthier, J. L., Brody, C. D., Tank, D. W. & Bialek, W., Oct 23 2019, In : Physical review letters. 123, 17, 178103.

Research output: Contribution to journalArticle

2 Scopus citations

Specialized coding of sensory, motor and cognitive variables in VTA dopamine neurons

Engelhard, B., Finkelstein, J., Cox, J., Fleming, W., Jang, H. J., Ornelas, S., Koay, S. A., Thiberge, S. Y., Daw, N. D., Tank, D. W. & Witten, I. B., Jun 27 2019, In : Nature. 570, 7762, p. 509-513 5 p.

Research output: Contribution to journalArticle

19 Scopus citations

Task-Dependent Changes in the Large-Scale Dynamics and Necessity of Cortical Regions

Pinto, L., Rajan, K., DePasquale, B., Thiberge, S. Y., Tank, D. W. & Brody, C. D., Nov 20 2019, In : Neuron. 104, 4, p. 810-824.e9

Research output: Contribution to journalArticle

7 Scopus citations

X-Ray Assisted Electron Microscopy Staining Procedure

Wanner, A., Tank, D. & Seung, S., May 29 2019

Research output: Innovation

2018

A Dedicated Population for Reward Coding in the Hippocampus

Gauthier, J. L. & Tank, D. W., Jul 11 2018, In : Neuron. 99, 1, p. 179-193.e7

Research output: Contribution to journalArticle

49 Scopus citations

A Map-like Micro-Organization of Grid Cells in the Medial Entorhinal Cortex

Gu, Y., Lewallen, S., Kinkhabwala, A. A., Domnisoru, C., Yoon, K., Gauthier, J. L., Fiete, I. R. & Tank, D. W., Oct 18 2018, In : Cell. 175, 3, p. 736-750.e30

Research output: Contribution to journalArticle

18 Scopus citations

An accumulation-of-evidence task using visual pulses for mice navigating in virtual reality

Pinto, L., Koay, S. A., Engelhard, B., Yoon, A. M., Deverett, B., Thiberge, S. Y., Witten, I. B., Tank, D. W. & Brody, C. D., Mar 6 2018, In : Frontiers in Behavioral Neuroscience. 12, 36.

Research output: Contribution to journalArticle

16 Scopus citations

Imaging Cortical Dynamics in GCaMP Transgenic Rats with a Head-Mounted Widefield Macroscope

Scott, B. B., Thiberge, S. Y., Guo, C., Tervo, D. G. R., Brody, C. D., Karpova, A. Y. & Tank, D. W., Dec 5 2018, In : Neuron. 100, 5, p. 1045-1058.e5

Research output: Contribution to journalArticle

15 Scopus citations
2017

Collective Behavior of Place and Non-place Neurons in the Hippocampal Network

Meshulam, L., Gauthier, J. L., Brody, C. D., Tank, D. W. & Bialek, W., Dec 6 2017, In : Neuron. 96, 5, p. 1178-1191.e4

Research output: Contribution to journalArticle

19 Scopus citations

Fronto-parietal Cortical Circuits Encode Accumulated Evidence with a Diversity of Timescales

Scott, B. B., Constantinople, C. M., Akrami, A., Hanks, T. D., Brody, C. D. & Tank, D. W., Jul 19 2017, In : Neuron. 95, 2, p. 385-398.e5

Research output: Contribution to journalArticle

32 Scopus citations

Mapping of a non-spatial dimension by the hippocampal-entorhinal circuit

Aronov, D., Nevers, R. & Tank, D. W., Mar 29 2017, In : Nature. 543, 7647, p. 719-722 4 p.

Research output: Contribution to journalArticle

136 Scopus citations

Stochastic filtering of two-photon imaging using reweighted ℓ1

Charles, A. S., Song, A., Koay, S. A., Tank, D. W. & Pillow, J. W., Jun 16 2017, 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1038-1042 5 p. 7952314. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Volumetric two-photon imaging of neurons using stereoscopy (vtwins)

Song, A., Charles, A. S., Koay, S. A., Gauthier, J. L., Thiberge, S. Y., Pillow, J. W. & Tank, D. W., Mar 20 2017, In : Nature Methods. 14, 4, p. 420-426 7 p.

Research output: Contribution to journalArticle

38 Scopus citations
2016

Automatic neuron detection in calcium imaging data using convolutional networks

Apthorpe, N. J., Riordan, A. J., Aguilar, R. E., Homann, J., Gu, Y., Tank, D. W. & Seung, H. S., Jan 1 2016, In : Advances in Neural Information Processing Systems. p. 3278-3286 9 p.

Research output: Contribution to journalConference article

16 Scopus citations

Grid Cell Responses in 1D Environments Assessed as Slices through a 2D Lattice

Yoon, K. J., Lewallen, S., Kinkhabwala, A. A., Tank, D. W. & Fiete, I. R., Mar 2 2016, In : Neuron. 89, 5, p. 1086-1099 14 p.

Research output: Contribution to journalArticle

18 Scopus citations

Recurrent Network Models of Sequence Generation and Memory

Rajan, K., Harvey, CD. D. & Tank, DW. W., Apr 6 2016, In : Neuron. 90, 1, p. 128-142 15 p.

Research output: Contribution to journalArticle

88 Scopus citations
2015

A single-compartment model of calcium dynamics in nerve terminals and dendrites

Helmchen, F. & Tank, D. W., Jan 1 2015, In : Cold Spring Harbor Protocols. 2015, 2, p. 155-167 13 p.

Research output: Contribution to journalArticle

10 Scopus citations

Sources of noise during accumulation of evidence in unrestrained and voluntarily head-restrained rats

Scott, B. B., Constantinople, C. M., Erlich, J. C., Tank, D. W. & Brody, C. D., Dec 17 2015, In : eLife. 4, DECEMBER2015, e11308.

Research output: Contribution to journalArticle

32 Scopus citations

The BRAIN initiative: Developing technology to catalyse neuroscience discovery

Jorgenson, L. A., Newsome, W., Anderson, D. J., Bargmann, C. I., Brown, E. N., Deisseroth, K., Donoghue, J. P., Hudson, K. L., Ling, G. S. F., Macleish, P. R., Marder, E., Normann, R. A., Sanes, J. R., Schnitzer, M. J., Sejnowski, T. J., Tank, D. W., Tsien, R. Y., Ugurbil, K. & Wingfield, J. C., May 19 2015, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1668, 20140164.

Research output: Contribution to journalArticle

90 Scopus citations
2014
40 Scopus citations

Engagement of Neural Circuits Underlying 2D Spatial Navigation in a Rodent Virtual Reality System

Aronov, D. & Tank, D. W., Oct 22 2014, In : Neuron. 84, 2, p. 442-456 15 p.

Research output: Contribution to journalArticle

88 Scopus citations

Prolonged, Brain-wide expression of nuclear-localized GCaMP3 for functional circuit mapping

Kim, C. K., Miri, A., Leung, L. C., Berndt, A., Mourrain, P., Tank, D. W. & Burdine, R. D., Nov 26 2014, In : Frontiers in neural circuits. 8, NOV, 138.

Research output: Contribution to journalArticle

9 Scopus citations

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields

Rickgauer, J. P., Deisseroth, K. & Tank, D. W., Jan 1 2014, In : Nature neuroscience. 17, 12, p. 1816-1824 9 p.

Research output: Contribution to journalArticle

154 Scopus citations

Two-photon imaging of neural activity in awake mobile mice

Dombeck, D. & Tank, D., Jul 1 2014, In : Cold Spring Harbor Protocols. 2014, 7, p. 726-736 11 p.

Research output: Contribution to journalArticle

13 Scopus citations
2013

A Modeling Framework for Deriving the Structural and Functional Architecture of a Short-Term Memory Microcircuit

Fisher, D., Olasagasti, I., Tank, D. W., Aksay, E. R. F. & Goldman, M. S., Sep 4 2013, In : Neuron. 79, 5, p. 987-1000 14 p.

Research output: Contribution to journalArticle

28 Scopus citations

Cellular Resolution Functional Imaging in Behaving Rats Using Voluntary Head Restraint

Scott, B. B., Brody, C. D. & Tank, D. W., Oct 16 2013, In : Neuron. 80, 2, p. 371-384 14 p.

Research output: Contribution to journalArticle

45 Scopus citations

Erratum: Membrane potential dynamics of grid cells (Nature (2013) 495 (199-204) DOI: 10.1038/nature11973)

Domnisoru, C., Kinkhabwala, A. A. & Tank, D. W., Nov 29 2013, In : Nature. 504, 7480, 1 p.

Research output: Contribution to journalComment/debate

Membrane potential dynamics of grid cells

Domnisoru, C., Kinkhabwala, A. A. & Tank, D. W., Mar 14 2013, In : Nature. 495, 7440, p. 199-204 6 p.

Research output: Contribution to journalArticle

187 Scopus citations

Voluntary Head Restraint and Automated In Vivo Imaging System

Tank, D., Scott, B. & Brody, C., Feb 26 2013

Research output: Innovation

2012

Choice-specific sequences in parietal cortex during a virtual-navigation decision task

Harvey, C. D., Coen, P. & Tank, D. W., Apr 5 2012, In : Nature. 484, 7392, p. 62-68 7 p.

Research output: Contribution to journalArticle

405 Scopus citations

The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs

Drocco, J. A., Wieschaus, E. F. & Tank, D. W., Oct 1 2012, In : Physical Biology. 9, 5, 055004.

Research output: Contribution to journalArticle

20 Scopus citations

Widespread state-dependent shifts in cerebellar activity in locomoting mice

Ozden, I., Dombeck, D. A., Hoogland, T. M., Tank, D. W. & Wang, S. S. H., Aug 3 2012, In : PloS one. 7, 8, e42650.

Research output: Contribution to journalArticle

62 Scopus citations
2011

Imaging and Recording From Head Fixed Rodents on a Spherical Treadmill

Khabbaz, A., Dombeck, D., Collman, F. & Tank, D., Dec 1 2011

Research output: Innovation

Measurement and perturbation of morphogen lifetime: Effects on gradient shape

Drocco, J. A., Grimm, O., Tank, D. W. & Wieschaus, E., Oct 19 2011, In : Biophysical Journal. 101, 8, p. 1807-1815 9 p.

Research output: Contribution to journalArticle

42 Scopus citations

Regression-based identification of behavior-encoding neurons during large-scale optical imaging of neural activity at cellular resolution

Miri, A., Daie, K., Burdine, R. D., Aksay, E. & Tank, D. W., Feb 1 2011, In : Journal of neurophysiology. 105, 2, p. 964-980 17 p.

Research output: Contribution to journalArticle

66 Scopus citations

Spatial gradients and multidimensional dynamics in a neural integrator circuit

Miri, A., Daie, K., Arrenberg, A. B., Baier, H., Aksay, E. & Tank, D. W., Sep 1 2011, In : Nature neuroscience. 14, 9, p. 1150-1161 12 p.

Research output: Contribution to journalArticle

71 Scopus citations

Spherical Mount for Head Fixed Behavior

Khabbaz, A. & Tank, D., Dec 1 2011

Research output: Innovation

2010

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation

Dombeck, D. A., Harvey, C. D., Tian, L., Looger, L. L. & Tank, D. W., Nov 1 2010, In : Nature neuroscience. 13, 11, p. 1433-1440 8 p.

Research output: Contribution to journalArticle

393 Scopus citations
2009

Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice

Dombeck, D. A., Graziano, M. S. & Tank, D. W., Nov 4 2009, In : Journal of Neuroscience. 29, 44, p. 13751-13760 10 p.

Research output: Contribution to journalArticle

120 Scopus citations

Intracellular dynamics of hippocampal place cells during virtual navigation

Harvey, C. D., Collman, F., Dombeck, D. A. & Tank, D. W., Oct 15 2009, In : Nature. 461, 7266, p. 941-946 6 p.

Research output: Contribution to journalArticle

500 Scopus citations

Pseudorabies virus infection alters neuronal activity and connectivity in vitro

McCarthy, K. M., Tank, D. W. & Enquist, L. W., Oct 1 2009, In : PLoS pathogens. 5, 10, e1000640.

Research output: Contribution to journalArticle

36 Scopus citations

Two-photon excitation of channelrhodopsin-2 at saturation

Rickgauer, J. P. & Tank, D. W., Sep 1 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 35, p. 15025-15030 6 p.

Research output: Contribution to journalArticle

172 Scopus citations
2008

Rate-specific synchrony: Using noisy oscillations to detect equally active neurons

Markowitz, D. A., Collman, F., Brody, C. D., Hopfield, J. J. & Tank, D. W., Jun 17 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 24, p. 8422-8427 6 p.

Research output: Contribution to journalArticle

17 Scopus citations

Response: Can We Fit All of the Data?

Bialek, W., Gregor, T., Tank, D. W. & Wieschaus, E. F., Jan 11 2008, In : Cell. 132, 1, p. 17-18 2 p.

Research output: Contribution to journalLetter

9 Scopus citations

Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons

Major, G., Polsky, A., Denk, W., Schiller, J. & Tank, D. W., May 1 2008, In : Journal of neurophysiology. 99, 5, p. 2584-2601 18 p.

Research output: Contribution to journalArticle

108 Scopus citations
2007

Erratum: Functional dissection of circuitry in a neural integrator (Nature Neuroscience (2007) 10, (494-504))

Aksay, E., Olasagasti, I., Mensh, B. D., Baker, R., Goldman, M. S. & Tank, D. W., Jun 1 2007, In : Nature Neuroscience. 10, 6, 1 p.

Research output: Contribution to journalComment/debate

Functional dissection of circuitry in a neural integrator

Aksay, E., Olasagasti, I., Mensh, B. D., Baker, R., Goldman, M. S. & Tank, D. W., Apr 1 2007, In : Nature neuroscience. 10, 4, p. 494-504 11 p.

Research output: Contribution to journalArticle

72 Scopus citations