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Dive into the research topics where Ben Raphael is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution
Raphael, B. (PI)
9/24/20 → 8/31/26
Project: Research project
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Computational Characterization of Genetic Heterogeneity
Raphael, B. (PI)
9/1/16 → 8/31/19
Project: Research project
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CAREER: Algorithms for Next-Generation Genomics
Raphael, B. (PI)
NSF - National Science Foundation
9/1/16 → 12/31/19
Project: Research project
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A graph homomorphism approach for unraveling histories of metastatic cancers and viral outbreaks under evolutionary constraints
Kuzmin, K., Schmidt, H., Kafi Kang, M., Snir, S., Raphael, B. J. & Skums, P., Dec 2025, In: Nature communications. 16, 1, 8027.Research output: Contribution to journal › Article › peer-review
Open Access2 Link opens in a new tab Scopus citations -
Anomaly detection in spatial transcriptomics via spatially localized density comparison
Hu, G., Gold, J., Chitra, U., Joshi, S. & Raphael, B. J., Jul 1 2025, In: Bioinformatics. 41, Supplement_1, p. i493-i501Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations -
Between Cluster Analysis: Supervised Dimensionality Reduction for Trajectory Inference
Strzalkowski, A., Zeira, R. & Raphael, B. J., 2025, (Accepted/In press) In: Bioinformatics. btaf306.Research output: Contribution to journal › Article › peer-review
Open Access -
Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction
PCAWG Evolution and Heterogeneity Working Group & SMC-Het Participants, Apr 2025, In: Nature Biotechnology. 43, 4, p. 581-592 12 p., 35.Research output: Contribution to journal › Article › peer-review
Open Access3 Link opens in a new tab Scopus citations -
DeST-OT: Alignment of spatiotemporal transcriptomics data
Halmos, P., Liu, X., Gold, J., Chen, F., Ding, L. & Raphael, B. J., Feb 19 2025, In: Cell Systems. 16, 2, 101160.Research output: Contribution to journal › Article › peer-review
Open Access11 Link opens in a new tab Scopus citations