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Dive into the research topics where Ben Raphael is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution
Raphael, B. (PI)
9/24/20 → 8/31/25
Project: Research project
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CAREER: Algorithms for Next-Generation Genomics
Raphael, B. (PI)
NSF - National Science Foundation
9/1/16 → 12/31/19
Project: Research project
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Computational Characterization of Genetic Heterogeneity
Raphael, B. (PI)
9/1/16 → 8/31/19
Project: Research project
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A count-based model for delineating cell-cell interactions in spatial transcriptomics data
Sarkar, H., Chitra, U., Gold, J. & Raphael, B. J., Jul 1 2024, In: Bioinformatics. 40, p. i481-i489Research output: Contribution to journal › Article › peer-review
Open Access -
DeST-OT: Alignment of Spatiotemporal Transcriptomics Data
Halmos, P., Liu, X., Gold, J., Chen, F., Ding, L. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 434-437 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data
Myers, M. A., Arnold, B. J., Bansal, V., Balaban, M., Mullen, K. M., Zaccaria, S. & Raphael, B. J., Dec 2024, In: Genome biology. 25, 1, 130.Research output: Contribution to journal › Article › peer-review
Open Access -
Inferring Allele-Specific Copy Number Aberrations and Tumor Phylogeography from Spatially Resolved Transcriptomics
Ma, C., Balaban, M., Liu, J., Chen, S., Ding, L. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 466-469 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Joint inference of cell lineage and mitochondrial evolution from single-cell sequencing data
Sashittal, P., Chen, V., Pasarkar, A. & Raphael, B. J., Jul 1 2024, In: Bioinformatics. 40, p. i218-i227Research output: Contribution to journal › Article › peer-review
Open Access