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Ben Raphael

  • 31383 Citations
  • 49 h-Index
20032020

Research output per year

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Projects

Computational Characterization of Genetic Heterogeneity

Raphael, B.

NIH NHGRI

9/1/16 → 8/31/19

Project: Research project

    • CAREER: Algorithms for Next-Generation Genomics

    Raphael, B.

    NSF - National Science Foundation

    9/1/16 → 12/31/19

    Project: Research project

    • Research Output

    Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

    PCAWG Drivers and Functional Interpretation Working Group, PCAWG Structural Variation Working Group & PCAWG Consortium, Feb 6 2020, In : Nature. 578, 7793, p. 102-111 10 p.

    Research output: Contribution to journal › Article

    Open Access
    • 24 Scopus citations

    Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

    PCAWG Drivers and Functional Interpretation Group & PCAWG Consortium, Dec 1 2020, In : Communications Biology. 3, 1, 56.

    Research output: Contribution to journal › Article

    Open Access
    • 5 Scopus citations

    Combined burden and functional impact tests for cancer driver discovery using DriverPower

    PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2020, In : Nature communications. 11, 1, 734.

    Research output: Contribution to journal › Article

    Open Access

    • Eleven grand challenges in single-cell data science

    Lähnemann, D., Köster, J., Szczurek, E., McCarthy, D. J., Hicks, S. C., Robinson, M. D., Vallejos, C. A., Campbell, K. R., Beerenwinkel, N., Mahfouz, A., Pinello, L., Skums, P., Stamatakis, A., Attolini, C. S. O., Aparicio, S., Baaijens, J., Balvert, M., Barbanson, B. D., Cappuccio, A., Corleone, G. & 31 others, Dutilh, B. E., Florescu, M., Guryev, V., Holmer, R., Jahn, K., Lobo, T. J., Keizer, E. M., Khatri, I., Kielbasa, S. M., Korbel, J. O., Kozlov, A. M., Kuo, T. H., Lelieveldt, B. P. F., Mandoiu, I. I., Marioni, J. C., Marschall, T., Mölder, F., Niknejad, A., Raczkowski, L., Reinders, M., Ridder, J. D., Saliba, A. E., Somarakis, A., Stegle, O., Theis, F. J., Yang, H., Zelikovsky, A., McHardy, A. C., Raphael, B. J., Shah, S. P. & Schönhuth, A., Feb 7 2020, In : Genome biology. 21, 1, 31.

    Research output: Contribution to journal › Review article

    Open Access
    • 3 Scopus citations

    Inferring structural variant cancer cell fraction

    PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 1 2020, In : Nature communications. 11, 1, 730.

    Research output: Contribution to journal › Article

    Open Access
    • 2 Scopus citations