Ben Raphael

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6 Similar Profiles

1 Active
2 Finished

Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution
Raphael, B.
NIH NCI
9/24/20 → 8/31/25
Project: Research project
Computational Characterization of Genetic Heterogeneity
Raphael, B.
NIH NHGRI
9/1/16 → 8/31/19
Project: Research project
CAREER: Algorithms for Next-Generation Genomics
Raphael, B.
NSF - National Science Foundation
9/1/16 → 12/31/19
Project: Research project

30712 Citations
50 h-Index
114 Article
20 Conference contribution
10 Review article
6 Editorial
More

Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL
Zaccaria, S. & Raphael, B. J., Feb 2021, In: Nature biotechnology. 39, 2, p. 207-214 8 p.
Research output: Contribution to journal › Article › peer-review
4 Scopus citations
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Dentro, S. C., Leshchiner, I., Haase, K., Tarabichi, M., Wintersinger, J., Deshwar, A. G., Yu, K., Rubanova, Y., Macintyre, G., Demeulemeester, J., Vázquez-García, I., Kleinheinz, K., Livitz, D. G., Malikic, S., Donmez, N., Sengupta, S., Anur, P., Jolly, C., Cmero, M., Rosebrock, D. & 53 others, Schumacher, S. E., Fan, Y., Fittall, M., Drews, R. M., Yao, X., Watkins, T. B. K., Lee, J., Schlesner, M., Zhu, H., Adams, D. J., McGranahan, N., Swanton, C., Getz, G., Boutros, P. C., Imielinski, M., Beroukhim, R., Sahinalp, S. C., Ji, Y., Peifer, M., Martincorena, I., Markowetz, F., Mustonen, V., Yuan, K., Gerstung, M., Spellman, P. T., Wang, W., Morris, Q. D., Wedge, D. C., Van Loo, P., Gonzalez, S., Bowtell, D. D., Campbell, P. J., Cao, S., Christie, E. L., Cun, Y., Dawson, K. J., Eils, R., Garsed, D. W., Ha, G., Jerman, L., Lee-Six, H., Mitchell, T. J., Oesper, L., Peto, M., Raphael, B. J., Salcedo, A., Shi, R., Shin, S. J., Stein, L. D., Spiro, O., Vembu, S., Wheeler, D. A. & Yang, T. P., Apr 15 2021, In: Cell. 184, 8, p. 2239-2254.e39
Research output: Contribution to journal › Article › peer-review

Open Access
NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks
Reyna, M. A., Chitra, U., Elyanow, R. & Raphael, B. J., May 2021, In: Journal of Computational Biology. 28, 5, p. 469-484 16 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Spatially interacting phosphorylation sites and mutations in cancer
Huang, K. L., Scott, A. D., Zhou, D. C., Wang, L. B., Weerasinghe, A., Elmas, A., Liu, R., Wu, Y., Wendl, M. C., Wyczalkowski, M. A., Baral, J., Sengupta, S., Lai, C. W., Ruggles, K., Payne, S. H., Raphael, B., Fenyö, D., Chen, K., Mills, G. & Ding, L., Dec 2021, In: Nature communications. 12, 1, 2313.
Research output: Contribution to journal › Article › peer-review

Open Access
STARCH: copy number and clone inference from spatial transcriptomics data
Elyanow, R., Zeira, R., Land, M. & Raphael, B. J., May 2021, In: Physical Biology. 18, 3, 035001.
Research output: Contribution to journal › Article › peer-review
1 Scopus citations

Ben Raphael

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