Projects per year
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Dive into the research topics where Ben Raphael is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution
9/24/20 → 8/31/25
Project: Research project
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CAREER: Algorithms for Next-Generation Genomics
NSF - National Science Foundation
9/1/16 → 12/31/19
Project: Research project
Research output
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Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL
Zaccaria, S. & Raphael, B. J., Feb 2021, In: Nature biotechnology. 39, 2, p. 207-214 8 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Dentro, S. C., Leshchiner, I., Haase, K., Tarabichi, M., Wintersinger, J., Deshwar, A. G., Yu, K., Rubanova, Y., Macintyre, G., Demeulemeester, J., Vázquez-García, I., Kleinheinz, K., Livitz, D. G., Malikic, S., Donmez, N., Sengupta, S., Anur, P., Jolly, C., Cmero, M., Rosebrock, D. & 53 others, , Apr 15 2021, In: Cell. 184, 8, p. 2239-2254.e39Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
Genome halving and aliquoting under the copy number distance
Zeira, R., Mon, G. & Raphael, B. J., Jul 1 2021, 21st International Workshop on Algorithms in Bioinformatics, WABI 2021. Carbone, A. & El-Kebir, M. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 18. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 201).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks
Reyna, M. A., Chitra, U., Elyanow, R. & Raphael, B. J., May 2021, In: Journal of Computational Biology. 28, 5, p. 469-484 16 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Spatially interacting phosphorylation sites and mutations in cancer
Huang, K. L., Scott, A. D., Zhou, D. C., Wang, L. B., Weerasinghe, A., Elmas, A., Liu, R., Wu, Y., Wendl, M. C., Wyczalkowski, M. A., Baral, J., Sengupta, S., Lai, C. W., Ruggles, K., Payne, S. H., Raphael, B., Fenyö, D., Chen, K., Mills, G. & Ding, L., Dec 2021, In: Nature communications. 12, 1, 2313.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations