Research output per year
Research output per year
- 19 results
Search results
-
2024
Maximum Likelihood Inference of Time-Scaled Cell Lineage Trees with Mixed-Type Missing Data
Mai, U., Chu, G. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 360-363 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2022
A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements
Simonaitis, P. & Raphael, B. J., Sep 1 2022, 22nd International Workshop on Algorithms in Bioinformatics, WABI 2022. Boucher, C. & Rahmann, S. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 21. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 242).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
Belayer: Modeling Discrete and Continuous Spatial Variation in Gene Expression from Spatially Resolved Transcriptomics
Ma, C., Chitra, U., Zhang, S. & Raphael, B. J., 2022, Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, Proceedings. Pe’er, I. (ed.). Springer Science and Business Media Deutschland GmbH, p. 372-373 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13278 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Learning Probabilistic Protein-DNA Recognition Codes from DNA-Binding Specificities Using Structural Mappings
Wetzel, J. L., Zhang, K. & Singh, M., 2022, Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, Proceedings. Pe’er, I. (ed.). Springer Science and Business Media Deutschland GmbH, p. 363-365 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13278 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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NetMix2: Unifying Network Propagation and Altered Subnetworks
Chitra, U., Park, T. Y. & Raphael, B. J., 2022, Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, Proceedings. Pe’er, I. (ed.). Springer Science and Business Media Deutschland GmbH, p. 193-208 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13278 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
2020
A guided network propagation approach to identify disease genes that combines prior and new information
Hristov, B. H., Chazelle, B. & Singh, M., 2020, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Schwartz, R. (ed.). Springer, p. 251-252 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12074 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access3 Scopus citations -
Identifying Evolutionary Origins of Repeat Domains in Protein Families
Aluru, C. & Singh, M., Sep 21 2020, Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020. Association for Computing Machinery, Inc, (Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
Netmix: a network-structured mixture model for reduced-bias estimation of altered subnetworks
Reyna, M. A., Chitra, U., Elyanow, R. & Raphael, B. J., 2020, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Schwartz, R. (ed.). Springer, p. 169-185 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12074 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access1 Scopus citations -
Single-cell tumor phylogeny inference with copy-number constrained mutation losses
Satas, G., Zaccaria, S., Mon, G. & Raphael, B. J., 2020, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Schwartz, R. (ed.). Springer, p. 273 1 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12074 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access -
2017
The copy-number tree mixture deconvolution problem and applications to multi-sample bulk sequencing tumor data
Zaccaria, S., El-Kebir, M., Klau, G. W. & Raphael, B. J., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). Springer Verlag, p. 318-335 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access13 Scopus citations -
2016
Research in computational molecular biology: 20th annual conference, RECOMB 2016 Santa Monica, CA, USA, April 17–21, 2016 proceedings
Singh, M., 2016, Research in Computational Molecular Biology - 20th Annual Conference, RECOMB 2016, Proceedings. Singh, M. (ed.). Springer Verlag, (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9649).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2014
Matrix compliance regulates tetraploidy in breast cancer cells
Simi, A. K., Radisky, D. C. & Nelson, C. M., 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, p. 716 1 p. (Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting; vol. 2).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2010
Dynamics of biological networks: Session introduction
Berger-Wolf, T. Y., Przytycka, T. M., Singh, M. & Slonim, D. K., 2010, Pacific Symposium on Biocomputing 2010, PSB 2010. p. 120-122 3 p. (Pacific Symposium on Biocomputing 2010, PSB 2010).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
5 Scopus citations -
2009
Analyzing and interrogating biological networks (abstract)
Banks, E., Nabieva, E., Chazelle, B., Peterson, R. & Singh, M., 2009, Bioinformatics and Computational Biology - First International Conference, BICoB 2009, Proceedings. p. 14-15 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5462 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Dynamics of biological networks
Berger-Wolf, T. Y., Przytycka, T. M. & Singh, M., 2009, Pacific Symposium on Biocomputing 2009, PSB 2009. p. 174-177 4 p. (Pacific Symposium on Biocomputing 2009, PSB 2009).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2008
Development of laboratory and computational techniques for optimal and quantitative understanding of cellular metabolic networks
Feng, X., Rabinowitz, J. & Rabitz, H., 2008, IPDPS Miami 2008 - Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Program and CD-ROM. 4536416. (IPDPS Miami 2008 - Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Program and CD-ROM).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2006
A compact mathematical programming formulation for DNA motif finding
Kingsford, C., Zaslavsky, E. & Singh, M., 2006, Combinatorial Pattern Matching - 17th Annual Symposium, CPM 2006, Proceedings. Springer Verlag, p. 233-245 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4009 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
11 Scopus citations -
2003
The Side-Chain Positioning Problem: A Semidefinite Programming Formulation with New Rounding Schemes
Chazelle, B., Kingsford, C. & Singh, M., 2003, Principles of Computing and Knowledge: Paris C. Kanellakis Memorial Workshop. p. 86-94 9 p. (Principles of Computing and Knowledge: Paris C. Kanellakis Memorial Workshop).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
6 Scopus citations -
1990
Learning functions of k terms
Blum, A. & Singh, M., Jul 1 1990, Proceedings of the 3rd Annual Workshop on Computational Learning Theory, COLT 1990. Association for Computing Machinery, p. 144-153 10 p. (Proceedings of the 3rd Annual Workshop on Computational Learning Theory, COLT 1990).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
34 Scopus citations