Research output per year
Research output per year
- 1 - 50 out of 1,064 results
Search results
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2024
A folate inhibitor exploits metabolic differences in Pseudomonas aeruginosa for narrow-spectrum targeting
Chain, C., Sheehan, J. P., Xu, X., Ghaffari, S., Godbole, A., Kim, H., Freundlich, J. S., Rabinowitz, J. D. & Gitai, Z., May 2024, In: Nature Microbiology. 9, 5, p. 1207-1219 13 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Alcohol-alcohol cross-coupling enabled by SH2 radical sorting
Chen, R., Intermaggio, N. E., Xie, J., Rossi-Ashton, J. A., Gould, C. A., Martin, R. T., Alcázar, J. & MacMillan, D. W. C., Mar 22 2024, In: Science. 383, 6689, p. 1350-1357 8 p.Research output: Contribution to journal › Article › peer-review
20 Scopus citations -
Alkene dialkylation by triple radical sorting
Wang, J. Z., Lyon, W. L. & MacMillan, D. W. C., Apr 4 2024, In: Nature. 628, 8006, p. 104-109 6 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
A natural bacterial pathogen of C. elegans uses a small RNA to induce transgenerational inheritance of learned avoidance
Sengupta, T., Ange, J. S., Kaletsky, R., Moore, R. S., Seto, R. J., Marogi, J., Myhrvold, C., Gitai, Z. & Murphy, C. T., Mar 28 2024, In: PLoS genetics. 20, 3, e1011178.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Bioelectric stimulation controls tissue shape and size
Shim, G., Breinyn, I. B., Martínez-Calvo, A., Rao, S. & Cohen, D. J., Dec 2024, In: Nature communications. 15, 1, 2938.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Biophysics of morphogenesis in the vertebrate lung
Banavar, S. P., Fowler, E. W. & Nelson, C. M., Jan 2024, In: Current Topics in Developmental Biology. 160, p. 65-86 22 p.Research output: Contribution to journal › Article › peer-review
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Bioprinting Cell-Laden Hydrogels for Studies of Epithelial Tissue Morphogenesis
Nerger, B. A. & Nelson, C. M., 2024, Methods in Molecular Biology. Humana Press Inc., p. 113-124 12 p. (Methods in Molecular Biology; vol. 2805).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Cell cycle arrest induces lipid droplet formation and confers ferroptosis resistance
Lee, H., Horbath, A., Kondiparthi, L., Meena, J. K., Lei, G., Dasgupta, S., Liu, X., Zhuang, L., Koppula, P., Li, M., Mahmud, I., Wei, B., Lorenzi, P. L., Keyomarsi, K., Poyurovsky, M. V., Olszewski, K. & Gan, B., Dec 2024, In: Nature communications. 15, 1, 79.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Correction to: Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis (Nature Genetics, (2024), 56, 4, (627-636), 10.1038/s41588-024-01689-8)
Mitra, S., Malik, R., Wong, W., Rahman, A., Hartemink, A. J., Pritykin, Y., Dey, K. K. & Leslie, C. S., Jun 2024, In: Nature Genetics. 56, 6, p. 1319 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Correction to: An end-to-end pipeline for succinic acid production at an industrially relevant scale using Issatchenkia orientalis (Nature Communications, (2023), 14, 1, (6152), 10.1038/s41467-023-41616-9)
Tran, V. G., Mishra, S., Bhagwat, S. S., Shafaei, S., Shen, Y., Allen, J. L., Crosly, B. A., Tan, S. I., Fatma, Z., Rabinowitz, J. D., Guest, J. S., Singh, V. & Zhao, H., Dec 2024, In: Nature communications. 15, 1, 1161.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Couple-close construction of polycyclic rings from diradicals
Long, A., Oswood, C. J., Kelly, C. B., Bryan, M. C. & MacMillan, D. W. C., Apr 11 2024, In: Nature. 628, 8007, p. 326-332 7 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Current advances in photocatalytic proximity labeling
Knutson, S. D., Buksh, B. F., Huth, S. W., Morgan, D. C. & MacMillan, D. W. C., Jun 20 2024, In: Cell Chemical Biology. 31, 6, p. 1145-1161 17 p.Research output: Contribution to journal › Review article › peer-review
2 Scopus citations -
Development of a dual channel detection system for pan-genotypic simultaneous quantification of hepatitis B and delta viruses
Liu, Y., Maya, S., Carver, S., O’Connell, A. K., Tseng, A. E., Gertje, H. P., Seneca, K., Nahass, R. G., Crossland, N. A. & Ploss, A., 2024, In: Emerging Microbes and Infections. 13, 1, 2350167.Research output: Contribution to journal › Article › peer-review
Open Access -
Development of a General Organophosphorus Radical Trap: Deoxyphosphonylation of Alcohols
Bissonnette, N. B., Bisballe, N., Tran, A. V., Rossi-Ashton, J. A. & MacMillan, D. W. C., Mar 27 2024, In: Journal of the American Chemical Society. 146, 12, p. 7942-7949 8 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Direct Bioisostere Replacement Enabled by Metallaphotoredox Deoxydifluoromethylation
Mao, E., Prieto Kullmer, C. N., Sakai, H. A. & MacMillan, D. W. C., Feb 28 2024, In: Journal of the American Chemical Society. 146, 8, p. 5067-5073 7 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
E-cadherin biomaterials reprogram collective cell migration and cell cycling by forcing homeostatic conditions
Suh, K., Cho, Y. K., Breinyn, I. B. & Cohen, D. J., Feb 27 2024, In: Cell Reports. 43, 2, 113743.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Emx2 underlies the development and evolution of marsupial gliding membranes
Moreno, J. A., Dudchenko, O., Feigin, C. Y., Mereby, S. A., Chen, Z., Ramos, R., Almet, A. A., Sen, H., Brack, B. J., Johnson, M. R., Li, S., Wang, W., Gaska, J. M., Ploss, A., Weisz, D., Omer, A. D., Yao, W., Colaric, Z., Kaur, P. & Leger, J. S. & 10 others, , May 2 2024, In: Nature. 629, 8010, p. 127-135 9 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Engaging Alkenes in Metallaphotoredox: A Triple Catalytic, Radical Sorting Approach to Olefin-Alcohol Cross-Coupling
Cai, Q., McWhinnie, I. M., Dow, N. W., Chan, A. Y. & MacMillan, D. W. C., May 8 2024, In: Journal of the American Chemical Society. 146, 18, p. 12300-12309 10 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
Ensemble Detection of DNA Engineering Signatures
Adler, A., Bader, J. S., Basnight, B., Booth, B. W., Cai, J., Cho, E., Collins, J. H., Ge, Y., Grothendieck, J., Keating, K., Marshall, T., Persikov, A., Scott, H., Siegelmann, R., Singh, M., Taggart, A., Toll, B., Wan, K. H., Wyschogrod, D. & Yaman, F. & 3 others, , Apr 19 2024, In: ACS Synthetic Biology. 13, 4, p. 1105-1115 11 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Evasion of NKG2D-mediated cytotoxic immunity by sarbecoviruses
Hartmann, J. A., Cardoso, M. R., Talarico, M. C. R., Kenney, D. J., Leone, M. R., Reese, D. C., Turcinovic, J., O'Connell, A. K., Gertje, H. P., Marino, C., Ojeda, P. E., De Paula, E. V., Orsi, F. A., Velloso, L. A., Cafiero, T. R., Connor, J. H., Ploss, A., Hoelzemer, A., Carrington, M. & Barczak, A. K. & 4 others, , May 9 2024, In: Cell. 187, 10, p. 2393-2410.e14Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Formation and transcriptional regulation of hepatitis B virus covalently closed circular DNA
Gomez-Moreno, A., Guo, J., Temple, H. M. & Ploss, A., Aug 2024, In: Journal of Hepatology. 81, 2, p. 367-369 3 p.Research output: Contribution to journal › Comment/debate › peer-review
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Free-Radical Deoxygenative Amination of Alcohols via Copper Metallaphotoredox Catalysis
Carson, W. P., Tsymbal, A. V., Pipal, R. W., Edwards, G. A., Martinelli, J. R., Cabré, A. & MacMillan, D. W. C., Jun 12 2024, In: Journal of the American Chemical Society. 146, 23, p. 15681-15687 7 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Genetic determinants of host- and virus-derived insertions for hepatitis E virus replication
Wißing, M. H., Meister, T. L., Nocke, M. K., Gömer, A., Masovic, M., Knegendorf, L., Brüggemann, Y., Bader, V., Siddharta, A., Bock, C. T., Ploss, A., Kenney, S. P., Winklhofer, K. F., Behrendt, P., Wedemeyer, H., Steinmann, E. & Todt, D., Dec 2024, In: Nature communications. 15, 1, 4855.Research output: Contribution to journal › Article › peer-review
Open Access -
Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation
Gupta, M., Johnson, A. N. T., Cruz, E. R., Costa, E. J., Guest, R. L., Li, S. H. J., Hart, E. M., Nguyen, T., Stadlmeier, M., Bratton, B. P., Silhavy, T. J., Wingreen, N. S., Gitai, Z. & Wühr, M., Dec 2024, In: Nature communications. 15, 1, 5890.Research output: Contribution to journal › Article › peer-review
Open Access -
Glucose-6-phosphate dehydrogenase maintains redox homeostasis and biosynthesis in LKB1-deficient KRAS-driven lung cancer
Lan, T., Arastu, S., Lam, J., Kim, H., Wang, W., Wang, S., Bhatt, V., Lopes, E. C., Hu, Z., Sun, M., Luo, X., Ghergurovich, J. M., Su, X., Rabinowitz, J. D., White, E. & Guo, J. Y., Dec 2024, In: Nature communications. 15, 1, 5857.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Glycine homeostasis requires reverse SHMT flux
McBride, M. J., Hunter, C. J., Zhang, Z., TeSlaa, T., Xu, X., Ducker, G. S. & Rabinowitz, J. D., Jan 2 2024, In: Cell Metabolism. 36, 1, p. 103-115.e4Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Highlights from the 2023 International Meeting on the Molecular Biology of Hepatitis B virus
Hbv, Allweiss, L., Cohen, C., Dias, J., Fumagalli, V., Guo, H., Harris, J. M., Hu, J., Iannacone, M., Isogawa, M., Jeng, W. J., Kim, K. H., Kramvis, A., Li, W., Lucifora, J., Muramatsu, M., Neuveut, C., Ploss, A., Pollicino, T. & Protzer, U. & 11 others, , May 1 2024, In: Journal of General Virology. 105, 5Research output: Contribution to journal › Review article › peer-review
Open Access -
How has the AI boom impacted algorithmic biology?
Singh, M., Sahinalp, C., Zeng, J., Li, W. V., Kingsford, C., Zhang, Q., Przytycka, T., Welch, J., Ma, J. & Berger, B., Jun 19 2024, In: Cell Systems. 15, 6, p. 483-487 5 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
How important is EMT for cancer metastasis?
Celià-Terrassa, T. & Kang, Y., Feb 2024, In: PLoS biology. 22, 2 February, e3002487.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
Interplay between hormonal and mechanical signals in mammary morphodynamics
Anlaş, A. A. & Nelson, C. M., Jun 2024, In: Trends in Cell Biology. 34, 6, p. 434-436 3 p.Research output: Contribution to journal › Short survey › peer-review
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Intracellular Delivery of Stabilized Peptide Blocking MTDH-SND1 Interaction for Breast Cancer Suppression
Chen, H., Zhan, M., Zhang, Y., Liu, J., Wang, R., An, Y., Gao, Z., Jiang, L., Xing, Y., Kang, Y., Li, Z. & Yin, F., Jan 22 2024, In: JACS Au. 4, 1, p. 139-149 11 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Mathematical Models of Early Hepatitis B Virus Dynamics in Humanized Mice
Ciupe, S. M., Dahari, H. & Ploss, A., May 2024, In: Bulletin of Mathematical Biology. 86, 5, 53.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Maximum Likelihood Inference of Time-Scaled Cell Lineage Trees with Mixed-Type Missing Data
Mai, U., Chu, G. & Raphael, B. J., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 360-363 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Mechanisms of Hepatitis B Virus cccDNA and Minichromosome Formation and HBV Gene Transcription
Gómez-Moreno, A. & Ploss, A., Apr 2024, In: Viruses. 16, 4, 609.Research output: Contribution to journal › Review article › peer-review
Open Access4 Scopus citations -
Mechanobiology: Shaping the future of cellular form and function
Nelson, C. M., Xiao, B., Wickström, S. A., Dufrêne, Y. F., Cosgrove, D. J., Heisenberg, C. P., Dupont, S., Shyer, A. E., Rodrigues, A. R., Trepat, X. & Diz-Muñoz, A., May 23 2024, In: Cell. 187, 11, p. 2652-2656 5 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access2 Scopus citations -
Metabolic heterogeneity in humans
Christofk, H., Metallo, C., Liu, G., Rabinowitz, J., Sparks, L. & James, D., Jul 25 2024, In: Cell. 187, 15, p. 3821-3823 3 p.Research output: Contribution to journal › Comment/debate › peer-review
1 Scopus citations -
Mitochondrial ATP generation is more proteome efficient than glycolysis
Shen, Y., Dinh, H. V., Cruz, E. R., Chen, Z., Bartman, C. R., Xiao, T., Call, C. M., Ryseck, R. P., Pratas, J., Weilandt, D., Baron, H., Subramanian, A., Fatma, Z., Wu, Z. Y., Dwaraknath, S., Hendry, J. I., Tran, V. G., Yang, L., Yoshikuni, Y. & Zhao, H. & 3 others, , Sep 2024, In: Nature Chemical Biology. 20, 9, p. 1123-1132 10 p.Research output: Contribution to journal › Article › peer-review
11 Scopus citations -
mTORC1 controls murine postprandial hepatic glycogen synthesis via Ppp1r3b
Uehara, K., Lee, W. D., Stefkovich, M., Biswas, D., Santoleri, D., Whitlock, A. G., Quinn, W., Coopersmith, T., Creasy, K. T., Rader, D. J., Sakamoto, K., Rabinowitz, J. D. & Titchenell, P. M., Apr 1 2024, In: Journal of Clinical Investigation. 134, 7, e173782.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Multicenter integrated analysis of noncoding CRISPRi screens
Yao, D., Tycko, J., Oh, J. W., Bounds, L. R., Gosai, S. J., Lataniotis, L., Mackay-Smith, A., Doughty, B. R., Gabdank, I., Schmidt, H., Guerrero-Altamirano, T., Siklenka, K., Guo, K., White, A. D., Youngworth, I., Andreeva, K., Ren, X., Barrera, A., Luo, Y. & Yardımcı, G. G. & 14 others, , Apr 2024, In: Nature Methods. 21, 4, p. 723-734 12 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
One-carbon unit supplementation fuels purine synthesis in tumor-infiltrating T cells and augments checkpoint blockade
Xu, X., Chen, Z., Bartman, C. R., Xing, X., Olszewski, K. & Rabinowitz, J. D., May 16 2024, In: Cell Chemical Biology. 31, 5, p. 932-943.e8Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Parameter identifiability and model selection for partial differential equation models of cell invasion
Liu, Y., Suh, K., Maini, P. K., Cohen, D. J. & Baker, R. E., Mar 6 2024, In: Journal of the Royal Society Interface. 21, 212, 20230607.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Phenotypic plasticity – Implications for tumours in bone
Han, Y. & Kang, Y., Apr 2024, In: Journal of Bone Oncology. 45, 100592.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Preface
Nelson, C. M., 2024, In: Methods in Molecular Biology. 2805, p. vResearch output: Contribution to journal › Editorial › peer-review
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Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction
Amor, C., Fernández-Maestre, I., Chowdhury, S., Ho, Y. J., Nadella, S., Graham, C., Carrasco, S. E., Nnuji-John, E., Feucht, J., Hinterleitner, C., Barthet, V. J. A., Boyer, J. A., Mezzadra, R., Wereski, M. G., Tuveson, D. A., Levine, R. L., Jones, L. W., Sadelain, M. & Lowe, S. W., Mar 2024, In: Nature Aging. 4, 3, p. 336-349 14 p.Research output: Contribution to journal › Article › peer-review
Open Access33 Scopus citations -
Redefining the Synthetic Logic of Medicinal Chemistry. Photoredox-Catalyzed Reactions as a General Tool for Aliphatic Core Functionalization
Fernández, D. F., González-Esguevillas, M., Keess, S., Schäfer, F., Mohr, J., Shavnya, A., Knauber, T., Blakemore, D. C. & MacMillan, D. W. C., Apr 12 2024, In: Organic letters. 26, 14, p. 2702-2707 6 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Relatively Rare Populations of Invasive Cells Drive Progression of Heterogeneous Tumors
Leggett, S. E., Brennan, M. C., Martinez, S., Tien, J. & Nelson, C. M., Feb 2024, In: Cellular and Molecular Bioengineering. 17, 1, p. 7-24 18 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Removal of Pseudomonas type IV pili by a small RNA virus
Thongchol, J., Yu, Z., Harb, L., Lin, Y., Koch, M., Theodore, M., Narsaria, U., Shaevitz, J., Gitai, Z., Wu, Y., Zhang, J. & Zeng, L., Apr 5 2024, In: Science. 384, 6691, eadl0635.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Selected Ion Monitoring for Orbitrap-Based Metabolomics
Lu, W., McBride, M. J., Lee, W. D., Xing, X., Xu, X., Li, X., Oschmann, A. M., Shen, Y., Bartman, C. & Rabinowitz, J. D., Apr 2024, In: Metabolites. 14, 4, 184.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis
Mitra, S., Malik, R., Wong, W., Rahman, A., Hartemink, A. J., Pritykin, Y., Dey, K. K. & Leslie, C. S., Apr 2024, In: Nature Genetics. 56, 4, p. 627-636 10 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
The impact of epitranscriptomic modifications on liver disease
Berggren, K. A., Schwartz, R. E., Kleiner, R. E. & Ploss, A., Apr 2024, In: Trends in Endocrinology and Metabolism. 35, 4, p. 331-346 16 p.Research output: Contribution to journal › Review article › peer-review
1 Scopus citations