Research output per year
Research output per year
- 1 - 50 out of 52 results
Search results
-
2024
Conservation Biology, Discipline of
Dobson, A. P., Nowak, K. & Rodríguez, J. P., Jan 1 2024, Encyclopedia of Biodiversity, Third Edition: Volume 1-7. Elsevier, p. V4-562-V4-574Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
Huntingtin protein–protein interactions: From biology to therapeutic targets
Silva Ramos, E., Greco, T. M., Cristea, I. M. & Wanker, E. E., Jan 1 2024, Huntington's Disease: Pathogenic Mechanisms and Implications for Therapeutics. Elsevier, p. 159-186 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
2023
Experiments and Simulations to Investigate How Air Flows in Speech Can Transport a Virus: Research and Teaching Experiences during the COVID-19 Pandemic
Abkarian, M., Mendez, S., Bourrianne, P., Nunes, J. K. & Stone, H. A., Sep 29 2023, ACS Symposium Series. Nelson, D. J. (ed.). American Chemical Society, p. 11-36 26 p. (ACS Symposium Series; vol. 1448).Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
2022
Art Ashkin and the Origins of Optical Trapping and Particle Manipulation
Koch, M. D. & Shaevitz, J. W., 2022, Methods in Molecular Biology. Humana Press Inc., p. 11-22 12 p. (Methods in Molecular Biology; vol. 2478).Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
Life Cycles as a Central Organizing Theme for Studying Multicellularity
Staps, M., van Gestel, J. & Tarnita, C. E., Jan 1 2022, The Evolution of Multicellularity. CRC Press, p. 53-70 18 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
4 Scopus citations -
Putting in the Erk: Growth factor signaling and mesoderm morphogenesis
McFann, S. E., Shvartsman, S. Y. & Toettcher, J. E., Jan 2022, Cell Signaling Pathways in Development. Soriano, P. M. (ed.). Academic Press Inc., p. 263-310 48 p. (Current Topics in Developmental Biology; vol. 149).Research output: Chapter in Book/Report/Conference proceeding › Chapter
6 Scopus citations -
2021
Natural selection, genetic variation, and human diversity
Emery, L. S. & Akey, J. M., Apr 14 2021, Human Population Genomics: Introduction to Essential Concepts and Applications. Springer International Publishing, p. 205-234 30 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
Post-translational modification control of viral DNA sensors and innate immune signaling
Song, B., Liu, D., Greco, T. M. & Cristea, I. M., Jan 2021, Proteomics Approaches to Unravel Virus - Vertebrate Host Interactions. Gerold, G., Gerold, G., Gerold, G. & Gerold, G. (eds.). Academic Press Inc., p. 163-199 37 p. (Advances in Virus Research; vol. 109).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access16 Scopus citations -
Sex and death
Shi, C. & Murphy, C. T., Jan 2021, Nematode Models of Development and Disease. Jarriault, S. & Podbilewicz, B. (eds.). Academic Press Inc., p. 353-375 23 p. (Current Topics in Developmental Biology; vol. 144).Research output: Chapter in Book/Report/Conference proceeding › Chapter
4 Scopus citations -
2020
Population Dynamics of Species with Complex Life Cycles
Dobson, A., Jan 1 2020, Unsolved Problems in Ecology. Princeton University Press, p. 55-66 12 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
The design and logic of terminal patterning in Drosophila
Smits, C. M. & Shvartsman, S. Y., 2020, Gradients and Tissue Patterning. Small, S. & Briscoe, J. (eds.). Academic Press Inc., p. 193-217 25 p. (Current Topics in Developmental Biology; vol. 137).Research output: Chapter in Book/Report/Conference proceeding › Chapter
9 Scopus citations -
Transcriptional Profiling of C. elegans Adult Cells and Tissues with Age
Kaletsky, R. & Murphy, C. T., 2020, Methods in Molecular Biology. Humana Press Inc., p. 177-186 10 p. (Methods in Molecular Biology; vol. 2144).Research output: Chapter in Book/Report/Conference proceeding › Chapter
4 Scopus citations -
Using RNA tags for multicolor live imaging of chromatin loci and transcription in drosophila embryos
Chen, H. & Gregor, T., 2020, Methods in Molecular Biology. Humana Press Inc., p. 373-384 12 p. (Methods in Molecular Biology; vol. 2166).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access1 Scopus citations -
Why Does Intragenotypic Variance Persist?
Metcalf, C. J. E. & Ayroles, J. F., Jan 1 2020, Unsolved Problems in Ecology. Princeton University Press, p. 43-54 12 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
2019
Considerations for identifying endogenous protein complexes from tissue via immunoaffinity purification and quantitative mass spectrometry
Federspiel, J. D. & Cristea, I. M., 2019, Methods in Molecular Biology. Humana Press Inc., p. 115-143 29 p. (Methods in Molecular Biology; vol. 1977).Research output: Chapter in Book/Report/Conference proceeding › Chapter
7 Scopus citations -
Evidence of Critical Transitions and Coexistence of Alternative States in Nature: The Case of Malaria Transmission
Alonso, D., Dobson, A. & Pascual, M., 2019, Trends in Mathematics. Springer International Publishing, p. 73-79 7 p. (Trends in Mathematics; vol. 11).Research output: Chapter in Book/Report/Conference proceeding › Chapter
2 Scopus citations -
Immunofluorescence of microtubule assemblies in Amphibian oocytes and early embryos
Nguyen, T., Mitchison, T. J. & Wühr, M., 2019, Methods in Molecular Biology. Humana Press Inc., p. 17-32 16 p. (Methods in Molecular Biology; vol. 1920).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access2 Scopus citations -
Investigating mechanisms that control ubiquitin-mediated DAF-16/FOXO protein turnover
Heimbucher, T. & Murphy, C. T., 2019, Methods in Molecular Biology. Humana Press Inc., p. 41-49 9 p. (Methods in Molecular Biology; vol. 1890).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access -
Methods for characterizing protein acetylation during viral infection
Murray, L. A., Combs, A. N., Rekapalli, P. & Cristea, I. M., 2019, Post-translational Modifications That Modulate Enzyme Activity. Garcia, B. A. (ed.). Academic Press Inc., p. 587-620 34 p. (Methods in Enzymology; vol. 626).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access11 Scopus citations -
Mycoplasmal conjunctivitis in house finches: The study of an emerging disease
Dhondt, A. A., Dobson, A. P. & Hochachka, W. M., Jan 1 2019, Wildlife Disease Ecology: Linking Theory to Data and Application. Cambridge University Press, p. 574-597 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
Statistical methods to detect archaic admixture and identify introgressed sequences
Li, L. & Akey, J. M., Jul 29 2019, Handbook of Statistical Genomics. wiley, Vol. 1. p. 275-293 19 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
Workflows and considerations for investigating protein interactions of viral DNA sensors
Howard, T. R., Song, B. & Cristea, I. M., 2019, DNA Sensors and Inflammasomes. Sohn, J. (ed.). Academic Press Inc., p. 309-338 30 p. (Methods in Enzymology; vol. 625).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access -
2018
Live imaging of mRNA synthesis in drosophila
Garcia, H. G. & Gregor, T., 2018, Methods in Molecular Biology. Humana Press Inc., p. 349-357 9 p. (Methods in Molecular Biology; vol. 1649).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access15 Scopus citations -
Quantitative proteomics for Xenopus embryos II, data analysis
Sonnett, M., Gupta, M., Nguyen, T. & Wühr, M., 2018, Methods in Molecular Biology. Humana Press Inc., p. 195-215 21 p. (Methods in Molecular Biology; vol. 1865).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access10 Scopus citations -
Quantitative proteomics of Xenopus embryos I, sample preparation
Gupta, M., Sonnett, M., Ryazanova, L., Presler, M. & Wühr, M., 2018, Methods in Molecular Biology. Humana Press Inc., p. 175-194 20 p. (Methods in Molecular Biology; vol. 1865).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access24 Scopus citations -
Single mRNA molecule detection in drosophila
Little, S. C. & Gregor, T., 2018, Methods in Molecular Biology. Humana Press Inc., p. 127-142 16 p. (Methods in Molecular Biology; vol. 1649).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access16 Scopus citations -
2017
Asymmetries in cell division, cell size, and furrowing in the xenopus laevis embryo
Tassan, J. P., Wühr, M., Hatte, G. & Kubiak, J., 2017, Results and Problems in Cell Differentiation. Springer Verlag, p. 243-260 18 p. (Results and Problems in Cell Differentiation; vol. 61).Research output: Chapter in Book/Report/Conference proceeding › Chapter
3 Scopus citations -
Fundamentals of fluid dynamics with an introduction to the importance of interfaces
Stone, H. A., Nov 23 2017, Soft Interfaces. Oxford University Press, p. 3-79 77 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
11 Scopus citations -
Introduction to optical tweezers
Koch, M. D. & Shaevitz, J. W., 2017, Methods in Molecular Biology. Humana Press Inc., p. 3-24 22 p. (Methods in Molecular Biology; vol. 1486).Research output: Chapter in Book/Report/Conference proceeding › Chapter
18 Scopus citations -
Optogenetic control of Ras/Erk signaling using the Phy–PIF system
Goglia, A. G., Wilson, M. Z., DiGiorno, D. B. & Toettcher, J. E., 2017, Methods in Molecular Biology. Humana Press Inc., p. 3-20 18 p. (Methods in Molecular Biology; vol. 1636).Research output: Chapter in Book/Report/Conference proceeding › Chapter
15 Scopus citations -
Reconstructing ERK signaling in the Drosophila embryo from fixed images
Lim, B., Dsilva, C. J., Kevrekidis, I. G. & Shvartsman, S. Y., 2017, Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1487).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access -
Vertebrate embryonic cleavage pattern determination
Hasley, A., Chavez, S., Danilchik, M., Wühr, M. & Pelegri, F., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 117-171 55 p. (Advances in Experimental Medicine and Biology; vol. 953).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access27 Scopus citations -
2016
Approaches for studying the subcellular localization, interactions, and regulation of histone deacetylase 5 (HDAC5)
Guise, A. J. & Cristea, I. M., 2016, Methods in Molecular Biology. Humana Press Inc., p. 47-84 38 p. (Methods in Molecular Biology; vol. 1436).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access6 Scopus citations -
Biophysical measurements of bacterial cell shape
Nguyen, J. P., Bratton, B. P. & Shaevitz, J. W., Jun 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 227-245 19 p. (Methods in Molecular Biology; vol. 1440).Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
CHAPTER 2: Low-reynolds-number flows
Stone, H. A. & Duprat, C., 2016, Fluid�Structure Interactions in Low-Reynolds-Number Flows. Duprat, C. & Stone, H. A. (eds.). 4 ed. Royal Society of Chemistry, p. 25-77 53 p. (RSC Soft Matter; vol. 2016-January, no. 4).Research output: Chapter in Book/Report/Conference proceeding › Chapter
8 Scopus citations -
CHAPTER 3: Model problems coupling elastic boundaries and viscous flows
Stone, H. A. & Duprats, C., 2016, Fluid�Structure Interactions in Low-Reynolds-Number Flows. Duprat, C. & Stone, H. A. (eds.). 4 ed. Royal Society of Chemistry, p. 78-99 22 p. (RSC Soft Matter; vol. 2016-January, no. 4).Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
CHAPTER 6: Elastocapillarity
Duprat, C. & Stone, H. A., 2016, Fluid�Structure Interactions in Low-Reynolds-Number Flows. Duprat, C. & Stone, H. A. (eds.). 4 ed. Royal Society of Chemistry, p. 193-246 54 p. (RSC Soft Matter; vol. 2016-January, no. 4).Research output: Chapter in Book/Report/Conference proceeding › Chapter
2 Scopus citations -
Determining the composition and stability of protein complexes using an integrated label-free and stable isotope labeling strategy
Greco, T. M., Guise, A. J. & Cristea, I. M., Feb 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 39-63 25 p. (Methods in Molecular Biology; vol. 1410).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access10 Scopus citations -
Identification of Sirtuin4 (SIRT4) protein interactions: Uncovering candidate acyl-modified mitochondrial substrates and enzymatic regulators
Mathias, R. A., Greco, T. M. & Cristea, I. M., 2016, Methods in Molecular Biology. Humana Press Inc., p. 213-239 27 p. (Methods in Molecular Biology; vol. 1436).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access10 Scopus citations -
Positional Information and Cell Fate Determination in the Early Drosophila Embryo
Wieschaus, E., Dec 1 2016, Current Topics in Developmental Biology. Academic Press Inc., p. 567-579 13 p. (Current Topics in Developmental Biology; vol. 117).Research output: Chapter in Book/Report/Conference proceeding › Chapter
22 Scopus citations -
2014
Comparative gene expression between two yeast species
Guan, Y., Dunham, M. J., Troyanskaya, O. G. & Caudy, A. A., Jan 1 2014, Investigations in Yeast Functional Genomics and Molecular Biology. Apple Academic Press, p. 311-338 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
2013
Discovery of host-viral protein complexes during infection
Rowles, D. L., Terhune, S. S. & Cristea, I. M., 2013, Virus-Host Interactions: Methods and Protocols. Bailer, S. & Lieber, D. (eds.). p. 43-70 28 p. (Methods in Molecular Biology; vol. 1064).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access13 Scopus citations -
Filament depolymerization during bacterial mitosis
Banigan, E. J., Gelbart, M. A., Gitai, Z., Wingreen, N. S. & Liu, A. J., Jan 1 2013, Trends in Biophysics: From Cell Dynamics Toward Multicellular Growth Phenomena. Apple Academic Press, p. 71-94 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
2012
Complementary proteomic analysis of protein complexes
Greco, T. M., Miteva, Y., Conlon, F. L. & Cristea, I. M., 2012, Xenopus Protocols: Post-Genomic Approaches. Humana Press Inc., p. 391-407 17 p. (Methods in Molecular Biology; vol. 917).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access20 Scopus citations -
Immunoisolation of protein complexes from Xenopus
Conlon, F. L., Miteva, Y., Kaltenbrun, E., Waldron, L., Greco, T. M. & Cristea, I. M., 2012, Xenopus Protocols: Post-Genomic Approaches. Humana Press Inc., p. 369-390 22 p. (Methods in Molecular Biology; vol. 917).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access18 Scopus citations -
Micro- and nano-scale flows relevant to the environment
Stone, H. A., Jan 1 2012, Handbook of Environmental Fluid Dynamics, Volume One: Overview and Fundamentals. CRC Press, p. 177-187 11 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
2009
Computational analysis of the yeast proteome: Understanding and exploiting functional specificity in genomic data
Huttenhower, C., Myers, C. L., Hibbs, M. A. & Troyanskaya, O. G., 2009, Yeast Functional Genomics and Proteomics: Methods and Protocols. Stagljar, I. (ed.). p. 273-293 21 p. (Methods in Molecular Biology; vol. 548).Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
2008
Biclustering of data matrices in systems biology via optimal re-ordering
DiMaggio, P. A., McAllister, S. R., Floudas, C. A., Feng, X. J., Rabinowitz, J. D. & Rabitz, H. A., 2008, 18th European Symposium on Computer Aided Process Engineering. Braunschweig, B. & Joulia, X. (eds.). p. 569-574 6 p. (Computer Aided Chemical Engineering; vol. 25).Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
Protein Function Prediction via Analysis of Interactomes
Nabieva, E. & Singh, M., Dec 18 2008, Prediction of Protein Structures, Functions, and Interactions. John Wiley & Sons, Ltd, p. 231-258 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access2 Scopus citations -
2005
Predicting protein secondary and supersecondary structure
Singh, M., Dec 21 2005, Handbook of Computational Molecular Biology. CRC Press, p. 29.1-29.29Research output: Chapter in Book/Report/Conference proceeding › Chapter
4 Scopus citations