Chemical & Biological Engineering

2024

3D Printing Bacteria to Study Motility and Growth in Complex 3D Porous Media

Kōnane Bay, R., Hancock, A. M., Dill-Macky, A. S., Luu, H. N. & Datta, S. S., 2024, In: Journal of Visualized Experiments. 2024, 203, e66166.

Research output: Contribution to journal › Article › peer-review

Open Access

A butadiene-derived semicrystalline polyolefin with two-tiered chemical recyclability

Nie, C., Maguire, S. M., Zheng, C. W., Mohadjer Beromi, M., Register, R. A., Priestley, R. D., Davidson, E. C. & Chirik, P. J., Feb 8 2024, In: Chem. 10, 2, p. 698-712 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

A calibration-free model of micropipette aspiration for measuring properties of protein condensates

Roggeveen, J. V., Wang, H., Shi, Z. & Stone, H. A., Jun 4 2024, In: Biophysical Journal. 123, 11, p. 1393-1403 11 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

A Career in Catalysis: Enrique Iglesia

Barton, D. G., Bhan, A., Deshlahra, P., Gounder, R., Hibbitts, D., Kilos, B. A., Noh, G., Notestein, J. M., Sarazen, M. L. & Soled, S. L., Jul 19 2024, In: ACS Catalysis. 14, 14, p. 10583-10613 31 p.

Research output: Contribution to journal › Review article › peer-review

A comprehensive chemical production scheduling representation

Samadi, A. & Maravelias, C. T., Feb 2024, In: Computers and Chemical Engineering. 181, 108552.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

A General Approach to Activate Second-Scale Room Temperature Photoluminescence in Organic Small Molecules

Ivancevic, M. R., Wisch, J. A., Burlingame, Q. C., Rand, B. P. & Loo, Y. L., Aug 28 2024, In: Advanced Materials. 36, 35, 2402478.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

An examination of the performance of molecular dynamics force fields: Silicon and silicon dioxide reactive ion etching

Shim, S., Vella, J. R., Draney, J. S., Na, D. & Graves, D. B., Mar 1 2024, In: Journal of Vacuum Science and Technology A: Vacuum, Surfaces and Films. 42, 2, 023207.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

An Optimization Model for the Maximization of Crop Productivity, Biodiversity, and Ecosystem Services

Geissler, C. H. & Maravelias, C. T., Jan 2024, Computer Aided Chemical Engineering. Elsevier B.V., p. 2011-2016 6 p. (Computer Aided Chemical Engineering; vol. 53).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria

Carson, D. V., Juarez, R. J., Do, T., Yang, Z. J. & Link, A. J., Apr 19 2024, In: ACS chemical biology. 19, 4, p. 981-991 11 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

A quirky fluid that has robotic capabilities

Brun, P. T., Apr 18 2024, In: Nature. 628, 8008, p. 508-509 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Asymmetric oligomerization state and sequence patterning can tune multiphase condensate miscibility

Rana, U., Xu, K., Narayanan, A., Walls, M. T., Panagiotopoulos, A. Z., Avalos, J. L. & Brangwynne, C. P., Jul 2024, In: Nature chemistry. 16, 7, p. 1073-1082 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Bacterial spores respond to humidity similarly to hydrogels

Gor, G. Y., Scherer, G. W. & Stone, H. A., Mar 5 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 10, e2320763121.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Bioelectric stimulation controls tissue shape and size

Shim, G., Breinyn, I. B., Martínez-Calvo, A., Rao, S. & Cohen, D. J., Dec 2024, In: Nature communications. 15, 1, 2938.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Building on-chip cytoskeletal circuits via branched microtubule networks

Zaferani, M., Song, R., Petry, S. & Stone, H. A., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 4, e2315992121.

Research output: Contribution to journal › Article › peer-review

Open Access

Capillary rise in sharp corners: not quite universal

Wu, K., Duprat, C. & Stone, H. A., Jan 5 2024, In: Journal of Fluid Mechanics. 978, A26.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Catalytic Consequences of Hierarchical Pore Architectures within MFI and FAU Zeolites for Polyethylene Conversion

Tan, J. Z., Ortega, M., Miller, S. A., Hullfish, C. W., Kim, H., Kim, S., Hu, W., Hu, J. Z., Lercher, J. A., Koel, B. E. & Sarazen, M. L., May 17 2024, In: ACS Catalysis. 14, 10, p. 7536-7552 17 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Cephalosporin resistance, tolerance, and approaches to improve their activities

Araten, A. H., Brooks, R. S., Choi, S. D. W., Esguerra, L. L., Savchyn, D., Wu, E. J., Leon, G., Sniezek, K. J. & Brynildsen, M. P., Mar 2024, In: Journal of Antibiotics. 77, 3, p. 135-146 12 p.

Research output: Contribution to journal › Review article › peer-review

1 Scopus citations

Control of Solution Phase Behavior through Block-Random Copolymer Sequence

Taylor, L. W., Priestley, R. D. & Register, R. A., Feb 13 2024, In: Macromolecules. 57, 3, p. 916-925 10 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Cyclic Peptides from Graspetide Biosynthesis and Native Chemical Ligation

Choi, B., Acuña, A. & Link, A. J., May 1 2024, In: Journal of the American Chemical Society. 146, 17, p. 11605-11609 5 p.

Research output: Contribution to journal › Article › peer-review

Differential impacts of DNA repair machinery on fluoroquinolone persisters with different chromosome abundances

Tang, J., Herzfeld, A. M., Leon, G. & Brynildsen, M. P., May 2024, In: mBio. 15, 5

Research output: Contribution to journal › Article › peer-review

Open Access

E-cadherin biomaterials reprogram collective cell migration and cell cycling by forcing homeostatic conditions

Suh, K., Cho, Y. K., Breinyn, I. B. & Cohen, D. J., Feb 27 2024, In: Cell Reports. 43, 2, 113743.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Effects of Ligand Chemistry on Ion Transport in 2D Hybrid Organic–Inorganic Perovskites

Wei, G., Kaplan, A., Zhang, H., Loo, Y. L. & Webb, M. A., 2024, (Accepted/In press) In: Advanced Energy Materials.

Research output: Contribution to journal › Article › peer-review

Open Access

Evidence for widespread cytoplasmic structuring into mesoscale condensates

Keber, F. C., Nguyen, T., Mariossi, A., Brangwynne, C. P. & Wühr, M., Mar 2024, In: Nature cell biology. 26, 3, p. 346-352 7 p.

Research output: Contribution to journal › Letter › peer-review

3 Scopus citations

Evolution of the Electronic and Excitonic Properties in 2D Ruddlesden–Popper Perovskites Induced by Bifunctional Ligands

Zhong, X., Ni, X., Kaplan, A., Zhao, X., Ivancevic, M., Ball, M. L., Xu, Z., Li, H., Rand, B. P., Loo, Y. L., Brédas, J. L. & Kahn, A., May 10 2024, In: Advanced Energy Materials. 14, 18, 2304345.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation

Gupta, M., Johnson, A. N. T., Cruz, E. R., Costa, E. J., Guest, R. L., Li, S. H. J., Hart, E. M., Nguyen, T., Stadlmeier, M., Bratton, B. P., Silhavy, T. J., Wingreen, N. S., Gitai, Z. & Wühr, M., Dec 2024, In: Nature communications. 15, 1, 5890.

Research output: Contribution to journal › Article › peer-review

Open Access

High-accuracy method for modeling nucleation and growth of particles

Khrabry, A. I., Kaganovich, I. D., Raman, S., Turkoz, E. & Graves, D. B., 2024, In: Aerosol Science and Technology. 58, 9, p. 1033-1052 20 p.

Research output: Contribution to journal › Article › peer-review

High-throughput measurement of elastic moduli of microfibers by rope coiling

Liu, Y., Lo, J. H. Y., Nunes, J. K., Stone, H. A. & Shum, H. C., Mar 19 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 12, e2303679121.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Hybrid Physics-Informed Metabolic Cybergenetics: Process Rates Augmented with Machine-Learning Surrogates Informed by Flux Balance Analysis

Espinel-Ríos, S. & Avalos, J. L., Apr 17 2024, In: Industrial and Engineering Chemistry Research. 63, 15, p. 6685-6700 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Hydrodynamic interactions between rough surfaces

Yariv, E., Brandão, R., Wood, D. K., Szafraniec, H., Higgins, J. M., Bazazi, P., Pearce, P. & Stone, H. A., Mar 2024, In: Physical Review Fluids. 9, 3, L032301.

Research output: Contribution to journal › Article › peer-review

Implications of Defect Density and Polymer Interactions for CO₂ Capture on Amine-Functionalized MIL-101(Cr)

Yang, R. A., Cho, S., Hughes, S. N. & Sarazen, M. L., Sep 23 2024, In: ChemSusChem. 17, 18, e202400249.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Interfacial exchange dynamics of biomolecular condensates are highly sensitive to client interactions

Rana, U., Wingreen, N. S., Brangwynne, C. P. & Panagiotopoulos, A. Z., Apr 14 2024, In: Journal of Chemical Physics. 160, 14, 145102.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Interpenetrated and Bridged Nanocylinders from Self-Assembled Star Block Copolymers

Moghimi, E., Chubak, I., Ntetsikas, K., Polymeropoulos, G., Wang, X., Carillo, C., Statt, A., Cipelletti, L., Mortensen, K., Hadjichristidis, N., Panagiotopoulos, A. Z., Likos, C. N. & Vlassopoulos, D., Feb 13 2024, In: Macromolecules. 57, 3, p. 926-939 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Interplay between environmental yielding and dynamic forcing modulates bacterial growth

Hancock, A. M. & Datta, S. S., Apr 16 2024, In: Biophysical Journal. 123, 8, p. 957-967 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Interplay between hormonal and mechanical signals in mammary morphodynamics

Anlaş, A. A. & Nelson, C. M., Jun 2024, In: Trends in Cell Biology. 34, 6, p. 434-436 3 p.

Research output: Contribution to journal › Short survey › peer-review

Interplay of condensation and chromatin binding underlies BRD4 targeting

Strom, A. R., Eeftens, J. M., Polyachenko, Y., Weaver, C. J., Watanabe, H. F., Bracha, D., Orlovsky, N. D., Jumper, C. C., Jacobs, W. M. & Brangwynne, C. P., Jun 1 2024, In: Molecular biology of the cell. 35, 6, ar88.

Research output: Contribution to journal › Article › peer-review

Open Access

Investigation of W-SiC compositionally graded films as a divertor material

Lin, Z., Monton, C., Bringuier, S., Sinclair, G., Cheng, G., Marin, E., Bergstrom, Z., Rudakov, D., Popović, Z., Losada, U., Bykov, I., Ostrowski, E. T., Abe, S., Yao, N., Koel, B. E. & Abrams, T., Apr 15 2024, In: Journal of Nuclear Materials. 592, 154942.

Research output: Contribution to journal › Article › peer-review

Open Access

Kinetic Modeling Analysis of Ar Addition to Atmospheric Pressure N₂−H₂ Plasma for Plasma-Assisted Catalytic Synthesis of NH₃

Lin, Z., Abe, S., Chen, Z., Jaiswal, S. & Koel, B. E., Mar 28 2024, In: Journal of Physical Chemistry A. 128, 12, p. 2427-2437 11 p.

Research output: Contribution to journal › Article › peer-review

Large-scale spatially explicit analysis of carbon capture at cellulosic biorefineries

O’Neill, E. G., Geissler, C. H. & Maravelias, C. T., Jul 2024, In: Nature Energy. 9, 7, p. 828-838 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Mitochondrial ATP generation is more proteome efficient than glycolysis

Shen, Y., Dinh, H. V., Cruz, E. R., Chen, Z., Bartman, C. R., Xiao, T., Call, C. M., Ryseck, R. P., Pratas, J., Weilandt, D., Baron, H., Subramanian, A., Fatma, Z., Wu, Z. Y., Dwaraknath, S., Hendry, J. I., Tran, V. G., Yang, L., Yoshikuni, Y. & Zhao, H. & 3 others, Maranas, C. D., Wühr, M. & Rabinowitz, J. D., Sep 2024, In: Nature Chemical Biology. 20, 9, p. 1123-1132 10 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Molecular Simulation of Lithium Carbonate Reactive Vapor-Liquid Equilibria Using a Deep Potential Model

Kussainova, D. & Panagiotopoulos, A. Z., Jan 11 2024, In: Journal of Chemical and Engineering Data. 69, 1, p. 204-214 11 p.

Research output: Contribution to journal › Article › peer-review

Nitrogen fixation as NO_x using air plasma coupled with heterogeneous catalysis at atmospheric pressure

Pei, X., Li, Y., Luo, Y., Man, C., Zhang, Y., Lu, X. & Graves, D. B., Jan 2024, In: Plasma Processes and Polymers. 21, 1, 2300135.

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Obstructed swelling and fracture of hydrogels

Plummer, A., Adkins, C., Louf, J. F., Košmrlj, A. & Datta, S. S., Jan 22 2024, In: Soft matter. 20, 7, p. 1425-1437 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Optimization methods for plastics management supply chain design

Wang, S. & Maravelias, C. T., Aug 2024, In: AIChE Journal. 70, 8, e18464.

Research output: Contribution to journal › Article › peer-review

Open Access

Parameter identifiability and model selection for partial differential equation models of cell invasion

Liu, Y., Suh, K., Maini, P. K., Cohen, D. J. & Baker, R. E., Mar 6 2024, In: Journal of the Royal Society Interface. 21, 212, 20230607.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Property-guided generation of complex polymer topologies using variational autoencoders

Jiang, S., Dieng, A. B. & Webb, M. A., Dec 2024, In: npj Computational Materials. 10, 1, 139.

Research output: Contribution to journal › Article › peer-review

Open Access

Quantitative proteome dynamics across embryogenesis in a model chordate

Frese, A. N., Mariossi, A., Levine, M. S. & Wühr, M., Apr 19 2024, In: iScience. 27, 4, 109355.

Research output: Contribution to journal › Article › peer-review

Open Access

Rapid Room-Temperature Aerosol Dehydration Versus Spray Drying: A Novel Paradigm in Biopharmaceutical Drying Technologies

Poozesh, S., Mezhericher, M., Pan, Z., Chaudhary, U., Manikwar, P. & Stone, H. A., Apr 2024, In: Journal of Pharmaceutical Sciences. 113, 4, p. 974-981 8 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Rayleigh-Taylor Instability in Soft Viscoelastic Solids

Slutzky, M., Hwang, J., Stone, H. A. & Nunes, J. K., Jan 16 2024, In: Langmuir. 40, 2, p. 1567-1575 9 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Relatively Rare Populations of Invasive Cells Drive Progression of Heterogeneous Tumors

Leggett, S. E., Brennan, M. C., Martinez, S., Tien, J. & Nelson, C. M., Feb 2024, In: Cellular and Molecular Bioengineering. 17, 1, p. 7-24 18 p.

Research output: Contribution to journal › Article › peer-review

Ribogreen Fluorescent Assay Kinetics to Measure Ribonucleic Acid Loading into Lipid Nanoparticle Carriers

Bizmark, N., Nayagam, S., Kim, B., Amelemah, D. F., Zhang, D., Datta, S. S., Priestley, R. D., Colace, T., Wang, J. & Prud'homme, R. K., Jun 17 2024, In: Advanced Materials Interfaces. 11, 17, 2301083.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Chemical & Biological Engineering

Research output

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